Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A24
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 607 PLIPAGSDAATVLEQMQKSPVTVTEESG 524
           P++  GSD+ T  +  Q S   V +E+G
Sbjct: 68  PVVSQGSDSYTAPDGQQVSITYVADENG 95


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -1

Query: 607 PLIPAGSDAATVLEQMQKSPVT-VTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQ 431
           P  P  +++ ++  +   S  +  T+E+    T D    +   + ++     +  ++S +
Sbjct: 213 PPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKK 272

Query: 430 DATPTTPVFXKCS 392
             +P TP   KCS
Sbjct: 273 KLSPATPKGSKCS 285


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 125 HREDIPVITSTGKEL 169
           H  D PV+ ++G+EL
Sbjct: 539 HHRDTPVVRASGREL 553


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 125 HREDIPVITSTGKEL 169
           H  D PV+ ++G+EL
Sbjct: 629 HHRDTPVVRASGREL 643


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 332  RRGKRSPNGEAPPRRRSA-----PQN*EAVRLVPATLARGAAPAR 213
            +RG+ +P   A  ++  A     PQ+ EA +  PAT  +G  P R
Sbjct: 993  KRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKR 1037


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,194
Number of Sequences: 438
Number of extensions: 4490
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)