Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_A24
(862 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39320.1 68417.m05567 microtubule-associated protein-related ... 32 0.56
At3g44200.1 68416.m04739 protein kinase family protein contains ... 31 0.99
At5g24290.2 68418.m02858 integral membrane family protein contai... 30 1.7
At5g24290.1 68418.m02857 integral membrane family protein contai... 30 1.7
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot... 30 1.7
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 30 2.3
At2g10340.1 68415.m01086 hypothetical protein 30 2.3
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 29 4.0
At4g28240.1 68417.m04046 wound-responsive protein-related wound-... 29 4.0
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 29 5.3
At3g11890.2 68416.m01458 expressed protein 28 9.2
At3g11890.1 68416.m01457 expressed protein 28 9.2
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 28 9.2
>At4g39320.1 68417.m05567 microtubule-associated protein-related
contains weak similarity to microtubule-associated
protein 1B (MAP 1B) (Swiss-Prot:P46821) [Homo sapiens]
Length = 166
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 676 ETLXPLSDTXYKIXXDRVPRDAL---PLIPAGSDAATVLEQMQKSPVTVTE 533
E P ++T Y + R P D ++P D TVLE+ K P T T+
Sbjct: 81 EAKSPATETKYSVTEKRAPADKKITPEMMPVTEDLKTVLEEEAKPPATETK 131
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 607 PLIPAGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRS-ELSDQ 431
P +P+ S+ + ++ SPV+ T E R + + + + SS++ ++ EL D
Sbjct: 526 PSVPSESETNSHQSRVHASPVSTTPEPKRTSVGSAKGMQSESSNSISSSLSMQAFELCDD 585
Query: 430 DATPTTPVFXKCSPESHER 374
+TP + +P+ H R
Sbjct: 586 ASTPYIDMTEHTTPDDHRR 604
>At5g24290.2 68418.m02858 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 363 EAIRSDDDMLPSRETQSQRRGSAPAPICPTEL 268
E+ R D +P+RE +S+ +APAP+ TE+
Sbjct: 33 ESYRFGKDNVPAREFRSKAAATAPAPVNTTEI 64
>At5g24290.1 68418.m02857 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 550
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 363 EAIRSDDDMLPSRETQSQRRGSAPAPICPTEL 268
E+ R D +P+RE +S+ +APAP+ TE+
Sbjct: 33 ESYRFGKDNVPAREFRSKAAATAPAPVNTTEI 64
>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor, Homo
sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1793
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 TSTGKELRRGMARAS-HCWQVPTGLARRREPASRA 250
+S+ K+L+ +RAS + W++P G +RRE ++RA
Sbjct: 1697 SSSAKKLQSESSRASEYRWRIPLGSGKRRELSARA 1731
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing protein
similar to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627, aysnaptic 1 [Brassica oleracea var.
alboglabra] GI:23506946; contains Pfam profile PF02301:
HORMA domain
Length = 1399
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = -1
Query: 631 DRVPRDALPLIPAGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQ 452
DR+ + ++PA + E + V V E + +T DDR + A P G V
Sbjct: 985 DRMCLEGADVVPAQE----IAECDRSQSVQVVEPEVQNIT-DDRSVVVYAAPPAGEEVNT 1039
Query: 451 RSELSDQDATPTTPVFXKCSPESHERQAEGSDQV*RRHAAVEG 323
+ DQD T E+ G++Q +R A+ G
Sbjct: 1040 GLTILDQDKDETVAEPGISRRSREEKGKGGANQSKKRSASEAG 1082
>At2g10340.1 68415.m01086 hypothetical protein
Length = 85
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 643 KIXXDRVPRDALPLIPAGSDAATVLEQMQKSPVTVTEESGRGLT 512
K D++PR+A P PA + + LE ++ TVT++ + LT
Sbjct: 37 KTVEDQLPREANPTAPAVAPLSLSLEDLKAILATVTKDLSQRLT 80
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 73 FRHPAPSNPHIYFEG 117
F+HPAP +PHIY G
Sbjct: 82 FQHPAPLHPHIYSNG 96
>At4g28240.1 68417.m04046 wound-responsive protein-related
wound-induced protein - tomato (fragment), PIR2:S19773
Length = 86
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -1
Query: 334 AVEGNAVPTARLRPGADLPHRTERRSVSCPRRWLAAPRQPGRYLPT 197
AV+GNA +L+ G HR +RR +S R LAA G LP+
Sbjct: 15 AVQGNADHGVKLKSGLTSAHRLQRR-LSSDLRPLAAADLTGDSLPS 59
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH6-1)
(AGAA.3) identical to SP|O04716 DNA mismatch repair
protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis thaliana}
Length = 1324
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 589 SDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARAL 479
S+ A +L ++ + V +E GRG D QAIA ++
Sbjct: 1144 SETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESV 1180
>At3g11890.2 68416.m01458 expressed protein
Length = 527
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 208 TDRAGAAPRASVAGTRRTASQFCGADRRRGGASPLGLRFPR 330
T R AP+ S+ +R+ + RRR G P +RFPR
Sbjct: 394 TTRKAPAPKRSLQESRKNQDRRVEIHRRRAGHKP--IRFPR 432
>At3g11890.1 68416.m01457 expressed protein
Length = 500
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 208 TDRAGAAPRASVAGTRRTASQFCGADRRRGGASPLGLRFPR 330
T R AP+ S+ +R+ + RRR G P +RFPR
Sbjct: 367 TTRKAPAPKRSLQESRKNQDRRVEIHRRRAGHKP--IRFPR 405
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 73 FRHPAPSNPHIYFEG 117
F HPAP +PHIY G
Sbjct: 82 FLHPAPLHPHIYSNG 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,904
Number of Sequences: 28952
Number of extensions: 363856
Number of successful extensions: 962
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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