Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A23
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   163   2e-41
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    31   0.15 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    30   0.36 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.9  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   5.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   5.8  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   7.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   7.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   7.6  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  163 bits (397), Expect = 2e-41
 Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
 Frame = -2

Query: 740 FLXTEXFXK-VSDQPSTSVCLIGCXSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDL 564
           FL +E F K +    +  + +    SAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDL
Sbjct: 379 FLESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDL 438

Query: 563 DAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQ 384
           DA T+  L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+   ++  FE +F  
Sbjct: 439 DAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIP 498

Query: 383 HIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 270
           ++++S   ++  I K+G ++  ++ SLK ++ +FL++F
Sbjct: 499 YLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = -2

Query: 713 VSDQPSTSVCLIGCXSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNR 534
           + D P+ S  ++ C +   ++ +K VAG +K  L+   E+        + D    +LLN 
Sbjct: 186 MQDSPTVSRVVVDCANGVGSQPLKTVAGLVKDSLS--IELV-------NTDVRASELLNN 236

Query: 533 GMRLTELLKQGQYVPMAIEEQVA--IIYCGVRGHLDKL 426
           G    + +K  Q  P+A+E ++    +Y  + G  D+L
Sbjct: 237 GCG-ADFVKTKQSPPLALEGKIKPNQLYASIDGDADRL 273


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 680 IGCXSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG--MRLTELLK 507
           IG  S   T+  +   G +  E   Y  +  FA+  +D+D   +QL+  G   ++T+L  
Sbjct: 341 IGLMSKLVTQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGDTEKMTDLFS 400

Query: 506 QGQYVPMAIEEQVAI 462
           + +      E  +A+
Sbjct: 401 KSRLYRYFFETSIAV 415


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 434  DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 279
            DK+DP    AF+K  T ++ TS       + KD   T  S   L  I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = -2

Query: 437 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 288
           L++LDP KIT  + E    I +        QG  S++ K  +  P+  A     VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 601 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 497
           +R    P   L W PLH +  +    LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 713 VSDQPSTSVCLIGCXSAAQTKAM 645
           VSD P  +VC I C +  + KA+
Sbjct: 217 VSDYPKVNVCYINCMTINEPKAI 239


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 351  GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 485
            G+   + S+ +  +FLL   DF G +L+  T     +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 86  YQHSIQPI*MLYYYSSH 136
           Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 447 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 581
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,091
Number of Sequences: 5004
Number of extensions: 56241
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)