Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A23
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...   131   5e-31
At1g50730.1 68414.m05705 expressed protein                             31   0.72 
At2g30480.2 68415.m03713 expressed protein                             31   1.3  
At2g30480.1 68415.m03712 expressed protein                             31   1.3  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   8.9  
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain...    28   8.9  

>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
            putative very strong similarity to SP|P23413 ATP synthase
            alpha chain, mitochondrial (EC 3.6.3.14) {Brassica
            campestris}; contains Pfam profiles PF00006: ATP synthase
            alpha/beta family nucleotide-binding domain, PF00306: ATP
            synthase ab C terminal, PF02874: ATP synthase alpha/beta
            family beta-barrel domain
          Length = 777

 Score =  131 bits (317), Expect = 5e-31
 Identities = 73/133 (54%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
 Frame = -2

Query: 692  SVCLIGCXSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 513
            SV  +G  SAAQ KAMKQV GS KLELAQYREVAAFAQFGSDLDAATQ LLNRG RLTE+
Sbjct: 643  SVSRVG--SAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEV 700

Query: 512  LKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTS-HQGLLSTIAKD 336
             KQ QY P+ IE+Q+ +IY  V G  D++   +I+ +EK     +K    Q L   +  +
Sbjct: 701  PKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKGGLTNE 760

Query: 335  GQITPESDASLKK 297
             ++ P  DA LK+
Sbjct: 761  RKMEP--DAFLKE 771


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = -2

Query: 563 DAATQQLLNR---GMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLDKLDPSKITAFE 399
           D +  Q+LN    G RL+E   Q  ++   I+E  Q A  Y  +  +L  +D       +
Sbjct: 448 DCSFSQVLNYRLLGNRLSEGKSQEGFLSSLIDEVIQAASQYQSLYDYLRIMDAYVDLMLQ 507

Query: 398 KEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFTQSQ 258
            +   H+      ++S +A+D  ++ E  ASL+ I+   L+ F   Q
Sbjct: 508 NKMENHLDALLDDIVS-LARDKFLSEEEQASLQSIILKLLSHFENLQ 553


>At2g30480.2 68415.m03713 expressed protein
          Length = 566

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 511 RSSVRRIPLLSSCCVAASKSEPNWAKAATSRY*ANSSFMEPATCFIALV*AADXHPIRQT 690
           RS++R  P   S  +  +   P++AKAATS +  ++ F  P    I L    D H +R  
Sbjct: 284 RSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSE 343

Query: 691 D 693
           +
Sbjct: 344 E 344


>At2g30480.1 68415.m03712 expressed protein
          Length = 621

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 511 RSSVRRIPLLSSCCVAASKSEPNWAKAATSRY*ANSSFMEPATCFIALV*AADXHPIRQT 690
           RS++R  P   S  +  +   P++AKAATS +  ++ F  P    I L    D H +R  
Sbjct: 284 RSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSE 343

Query: 691 D 693
           +
Sbjct: 344 E 344


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 398  KEFTQHIKTSHQGLLSTIAKDGQIT 324
            ++  QH  T H+GLLST  KDG I+
Sbjct: 940  QQLFQHCHTHHEGLLST-KKDGMIS 963


>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 268

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 306 GGVRLGGDLTVFGDRGEKTLVASFDVLSEFLL--EGSDFGGVQLVEVTADTAVN 461
           GG  + GD+ +  + G   +V   DVL E LL  E  D  G Q++    ++  N
Sbjct: 120 GGFLVNGDVKIVVEVGVLEVVGKSDVLEETLLVHESIDINGFQVLPSQVESVNN 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,160
Number of Sequences: 28952
Number of extensions: 300622
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)