Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A21
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    29   4.7  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    29   4.7  

>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 494 PYPVYKEVQVPLVKEVPYPVKYHVP 420
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 494 PYPVYKEVQVPLVKEVPYPVKYHVP 420
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,212,712
Number of Sequences: 28952
Number of extensions: 202892
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)