Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A20
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.078
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   6.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.9  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   8.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 0.078
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 564 PPPAPGSTATDRCGKGRALPXLAPXXPSAKWWTRXSXASPSRTXL 698
           PPPAP S AT     G   P  AP   +    +  S AS +   L
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPL 55


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
 Frame = -1

Query: 594 PSPSSRGPEAGIRPYVP-----APVRGGLPP 517
           P P S  P  G+R  +P      P  GG PP
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGGPPSGGQPP 75


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 453 RCRGVNRATGRRCIASRPGRLVLVQ 379
           +CR  +R TG   +++  GRLV+ +
Sbjct: 200 QCRTKHRLTGETRLSATKGRLVITE 224


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 433 SDRSTVYRVPTRQAGSGPAGYSGTPAAPSGRP 338
           SDR +  R P  +    P    G P A   RP
Sbjct: 200 SDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRP 231


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 660 STISQKEXXERXKGELFPFRTD 595
           STI+     ER + EL PF T+
Sbjct: 38  STIALALGVERTRSELIPFLTE 59


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 361 PAAPSGRPDGLPYR 320
           PAAP+ R +G P R
Sbjct: 344 PAAPANRGNGFPKR 357


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 459 ECW*RAARPHPLRSPLDLHRG 521
           EC  R  R H L++ + LH G
Sbjct: 14  ECHKRFTRDHHLKTHMRLHTG 34


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 459 ECW*RAARPHPLRSPLDLHRG 521
           EC  R  R H L++ + LH G
Sbjct: 167 ECHKRFTRDHHLKTHMRLHTG 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,812
Number of Sequences: 336
Number of extensions: 3481
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)