Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A20
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.2  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   7.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.8  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 290 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 412
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 424 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 290
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 540 GPGRTGVFPPPAPGSTATDRCGKGRALPXLAPXXPSAKWW 659
           GPG   + PPP PG            +P  AP  P+  ++
Sbjct: 282 GPGGAPLVPPPPPGMVMASPSPAAATIPG-APVMPNIPFY 320


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 391 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 308
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 594 PSPSSRGPEAGIRPYVPAPV 535
           P+ + RG E  + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,645
Number of Sequences: 5004
Number of extensions: 52115
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)