Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A20
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    31   0.70 
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    31   1.2  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    28   6.5  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    28   8.6  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    28   8.6  
At3g59010.1 68416.m06577 pectinesterase family protein contains ...    28   8.6  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    28   8.6  

>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 477 ARPHPLRSPLDLHRGGGRHVQGPGRTGVFPPPAPGSTATDRCGKGRALPXLAPXXP 644
           A+ H      +LHR GG  V+  G+ GV P P    T  +  G       L+P  P
Sbjct: 279 AKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVP 334


>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +3

Query: 471 RAARPHPLRSPLDLHRGGGRHVQGPGRTGVFPPPAPGSTATDRCGKGRALPXLAPXXPSA 650
           RAA P P   P+ + +G       P  T   PPP P   A    GKG A P   P  P A
Sbjct: 229 RAALPPPPPLPMAVRKGVAAPPLPPPGTAALPPPPPLPMA---AGKGVAAP--PPPPPGA 283

Query: 651 K 653
           +
Sbjct: 284 R 284


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 594 PSPSSRGPEAGIRPYVPAPVRGGLPP 517
           P+P    P  G   Y PAP  GG PP
Sbjct: 56  PAPGGYPPAPGYGGYPPAPGYGGYPP 81


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 260 KDAQPTEPSRRIEGSETSAVSVRQPV 337
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 260 KDAQPTEPSRRIEGSETSAVSVRQPV 337
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536


>At3g59010.1 68416.m06577 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 529

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 346 QTVPLVSRNTPLDQNQPAGSGRDTP--STGRSIHS 444
           Q+  LVSR    DQN     GR  P  +TG SIH+
Sbjct: 387 QSCNLVSRKGSSDQNYVTAQGRSDPNQNTGISIHN 421


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 22  RGPNLLRGPRAKGARGVCETQRSAWCCEQTAGPR 123
           RGP    GP ++G RG   ++ +A     TAG +
Sbjct: 155 RGPTTRTGPASRGGRGGATSKSTAGARSSTAGKK 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,825,740
Number of Sequences: 28952
Number of extensions: 339388
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)