Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A18
         (860 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    54   4e-06
UniRef50_Q0RLN5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167, w...    33   7.0  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -1

Query: 809 AIFXLQFSRGXXGGVXAPMXKXGXPXGVRPISSR-GXEDKIRLSAXMARXXCXXYNIKPT 633
           + F   F  G  GG   PM + G    VRP + + G   + +      +           
Sbjct: 176 SFFRRNFRGGRRGGGPGPMNRGGFRR-VRPRNFQPGQGGQNQAQRQNGQDGDASATTSNQ 234

Query: 632 AGGPSLKVTNLXVLLLRQLPMRARPRH 552
             GPSLKVTNL VLLLRQLPMRARPRH
Sbjct: 235 QQGPSLKVTNLLVLLLRQLPMRARPRH 261


>UniRef50_Q0RLN5 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 133

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 618 AW-PPCCWFDVVXXASXPGHXGAEPDFVLXXPAGNWAD 728
           AW  P CW DVV      GH    PD  L  PA  +A+
Sbjct: 4   AWHDPTCWDDVVADLRSRGHLVLAPDLPLGDPAATYAE 41


>UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 214

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +1

Query: 235 YKIEISKSLKYNS*FSIQPKHINSSIYYL**KYHIFDPMIPMQF 366
           YK  I K +KY S FS+  K   S  YYL  KY+ F P     F
Sbjct: 136 YKFVIQKQIKYQSQFSVYQK--QSKDYYLLIKYYCFAPSYSYNF 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,624,367
Number of Sequences: 1657284
Number of extensions: 12164892
Number of successful extensions: 21686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21681
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)