Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A18
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine re...    31   1.1  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    29   3.2  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    29   3.2  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    29   3.2  

>AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein38 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 510 MHYINDVPHITASGMSRPGSHW*LSQ**YXQVCYF*AWPPCCWF 641
           +H+I     I  S ++R   HW ++      V YF AW   CWF
Sbjct: 108 VHFIYRFLVIYDSSLTRLHFHWYMTGSLLLSVAYFVAWQTICWF 151


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 378 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 265
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 478 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 515


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 378 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 265
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 378 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 265
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,598
Number of Sequences: 27780
Number of extensions: 316052
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)