Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A17
         (1074 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.43 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   4.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   4.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   4.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   4.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   7.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 298 HYXGXPVGIQPXDGAPLP 351
           HY G P G QP  G P P
Sbjct: 64  HYGGPPSGGQPPQGMPYP 81


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 103 LSVSTSPPGKPATSTASQNLSSPASS 128


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTASQNLSSPASS 172


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 163 LXLRAAPPGKPGIPSGDSSGTMPTSS 240
           L +  +PPGKP   +   + + P SS
Sbjct: 147 LSVSTSPPGKPATSTTSQNLSSPASS 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,271
Number of Sequences: 336
Number of extensions: 1201
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30826003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)