Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A17
         (1074 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    29   7.5  
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    29   7.5  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    24   8.7  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 222 AGGVPGWYAGLPGXGSP 172
           AGG+PG + G PG G+P
Sbjct: 297 AGGMPGGFPGAPGGGAP 313


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 222 AGGVPGWYAGLPGXGSP 172
           AGG+PG + G PG G+P
Sbjct: 297 AGGMPGGFPGAPGGGAP 313


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 24.2 bits (50), Expect(2) = 8.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 175 AAPPGKPGIP 204
           A PPGKPG+P
Sbjct: 248 AGPPGKPGMP 257



 Score = 22.6 bits (46), Expect(2) = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 184 PGKPGIPSGDSS 219
           PG+PGIP  D++
Sbjct: 266 PGEPGIPGSDAA 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,153,022
Number of Sequences: 27780
Number of extensions: 115238
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2877115450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)