Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A16
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    85   2e-17
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   1.0  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    28   1.4  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    28   1.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   5.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.8  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 684

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 64/210 (30%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
 Frame = -2

Query: 692  IQHXTKLYLCDXXXXXXXXXXXXXLYDFQNFGFIKLSNPLPLEELFVLGLNGSTQNSEQD 513
            +QH   LY+ D             L +F N+G   L  PL + +LF + +NG    SE +
Sbjct: 488  VQHNIGLYVVDYGKLSYHLFYQICLTEFGNYGEFVLETPLSISDLFEI-VNGDEDKSESE 546

Query: 512  SELGDTGEMAQHMTQLLLSKRAMLYEYFSLEVNGEGEXXXXXXXLDGHAPFVGALPTYLV 333
                         T+LL+S+R ML +YFS+ V   G           + P    LP  + 
Sbjct: 547  K-----------FTRLLVSRRDMLKDYFSISVTSGGLLTAVPMLSPKYHPPFEQLPLLIS 595

Query: 332  RLVTEV-NWDSEKECFETFCRQTAKFYAQPNP----DPNVESVSSEHRRQEHVIFPAIRK 168
             L  +  +W  EK C     +  AKFY  P P    + +V+S+ S     E  +FP  R+
Sbjct: 596  SLTPKFFDWLDEKSCLNGIMKAIAKFYV-PLPLSYEESDVKSIRSLESCLEDYLFPEFRR 654

Query: 167  YFLPPSSFISNGAILQIASLNDLYKVFERC 78
              + P        I QI SL  LY VFERC
Sbjct: 655  RVICPKKVFEEKCIYQITSLPRLYNVFERC 684


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 277 QKVSKHSFSESQLTSVTRRTKYVGKAPTNGA*PSKSNGRANNSPSP 414
           ++VSKH  + ++   V R+    G+ PT  + P+KS   + ++  P
Sbjct: 469 KRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRP 514


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -2

Query: 590 KLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSL 423
           +L N LPL  + +LGL   T + E+ +EL  T +++     LL+SK       FS+
Sbjct: 306 RLLNGLPLNLVKILGLKPDTSSFEKCAELMLTNQISTR--SLLISKSIKKLTSFSI 359


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 189 HVLLSPVLRRHALDIRVRIRLSIKLGRLSAESLKALLFRIPI 314
           H++    + RH+  +  +IR  +  GRL+ E   ALL  IPI
Sbjct: 24  HIIFMDAILRHSAYVLHKIRTILTFGRLTDEQ-TALLMGIPI 64


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 329 LVTEVNWDSEKECFETFCRQTAKFYAQPNPDPNVESVSSE 210
           + T + W  ++    T C++T  F+  P P  NV ++ S+
Sbjct: 20  ITTLLGWRLQQSSVVT-CQETIMFFNAPEPSTNVFTIQSK 58


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -1

Query: 642 GIVLRDITIRFSKLRFHQTVESIAI----GRIICSWSEREHSKLRTGF*ARRYR 493
           G+ +RD +   + L    +   ++I     ++   W + EH   +TGF  R Y+
Sbjct: 836 GVAIRDFSAELTYLTPENSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYK 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,288
Number of Sequences: 5004
Number of extensions: 63583
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)