Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A16
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   3e-26
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)                29   6.0  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   28   7.9  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064)                28   7.9  

>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score =  116 bits (278), Expect = 3e-26
 Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 3/170 (1%)
 Frame = -2

Query: 725  FIARIDCHKSLIQHXTKLYLCDXXXXXXXXXXXXXLYDFQNFGFIKLSNPLPLEELFVLG 546
            F+  +   ++L+QH TKLYL +             ++ F +FGF++LS   PL EL +L 
Sbjct: 511  FVGCVTPSQALVQHNTKLYLANIHSLSRELFYQIIMFQFGDFGFLRLSESAPLYELALLA 570

Query: 545  LNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSLEVNGEGEXXXXXXXLDGHA 366
            L  S ++    ++ G   ++AQ++   L+ K  ML +YFSLE++GEG        L+ + 
Sbjct: 571  LE-SPESGWTPAD-GAKEDLAQYIKDFLMQKAEMLLDYFSLEIDGEGNLLSLPLLLEEYV 628

Query: 365  PFVGALPTYLVRLVTEVNWDSEKECFETFCRQTAKFYA-QP--NPDPNVE 225
            P +  LP +++RL TEV WDSE ECF+TF ++ ++F++ +P  NPD +++
Sbjct: 629  PNLNGLPMFVLRLATEVEWDSELECFDTFAKECSRFFSFKPDVNPDDDLD 678



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = -2

Query: 197 EHVIFPAIRKYFLPPSSFISNGAILQIASLNDLYKVFER 81
           EHV+FPA R   +PP+ F  +G +LQIA+L +LYKVFER
Sbjct: 852 EHVLFPAFRSGLVPPTRFAEDGTLLQIANLTELYKVFER 890


>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
          Length = 1303

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 313 LTSVTRRTKYVGKAPTNGA*PSKSNGRANNSPS 411
           L   TRR+   G    NG  PSK N  ANN+P+
Sbjct: 143 LVQPTRRSS-TGSMKKNGTIPSKPNQTANNTPT 174


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 140 SNGAILQIASLNDLYKVFERC*CIMSNEECVCVF 39
           + GA +Q      +YKV+ERC C+    E VCV+
Sbjct: 74  TRGACVQGVREVRVYKVYERCVCVQGVRE-VCVY 106


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 617 YDFQNFGFIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLY 438
           YDF +F      N +  E L  +GL     +  ++ E GD       +  L + K+ +++
Sbjct: 82  YDFVHF------NEIMKECLLSMGLTEPGSSVVKEKEAGDVSRFLNRILGLSVEKQNLIF 135

Query: 437 EYFS 426
            YFS
Sbjct: 136 SYFS 139


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 HVLLSPVLRRHALDIRVRIRLSIKLGRLSAESLK 290
           ++ +S  +R H L ++  I L+ +LG LS E +K
Sbjct: 579 YISVSKTIRHHNLHLQTTIVLNHRLGHLSVEEIK 612


>SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064)
          Length = 617

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 465 IVEQTRNALRILFSGSKWRRRIIGP 391
           I  QTRN ++ L  G  WR  + GP
Sbjct: 428 IQSQTRNGMKKLIGGDAWRVHLTGP 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,634,059
Number of Sequences: 59808
Number of extensions: 460778
Number of successful extensions: 1186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)