Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A15
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    29   0.59 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.8  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    27   2.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   4.2  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   5.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.5  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    26   7.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   9.7  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 724 HDDSRSKNVGWRLXYFIXSDRLIPSVCDNVI 632
           HD+   K VG  + + +  D LIP +CDN +
Sbjct: 271 HDERYKKYVGRFVKHPLIDDLLIPVICDNAV 301


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 483  CREQLGGSGWWAVRHRDKVHKDFIPSVSRLLLDLERALSDSG 608
            C EQ GG   W +R R+ +H D I   S+  ++ +  L  SG
Sbjct: 1400 CMEQSGGIYPWQLRPRNGMHPDHISGFSK-EVETDPKLGSSG 1440


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 507 PTRPTAPDTHTSYKYWQKLVSNQK 436
           P  P AP TH +Y+Y++ + S+ K
Sbjct: 109 PRNPMAPTTHLNYRYFELVNSDGK 132


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -3

Query: 576 TTAEKPKE*SPCVLCPDAELPTSPTRPTAP-----DTHTSYKYWQKLVSN-QKFYYNILS 415
           +T+ KP   SP      AELP+    P+A       T T+  +   +VSN      ++LS
Sbjct: 120 STSNKPAAVSPNPAAHHAELPSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLS 179

Query: 414 VACKKNP 394
           VA   NP
Sbjct: 180 VAASPNP 186


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
 Frame = -3

Query: 540 VLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQKFYYN----ILSVACKKNPGNSLIF 376
           VL P++ L   PT P     H +  +W    +     +N     + +     P N+ IF
Sbjct: 375 VLTPNSSLKVDPTTPLTAPIHATESFWPSAAAAAAAVHNNANSYMPITPTPYPNNAKIF 433


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 531 DKVHKDFIPSVSRLLLDLERALSDSGRCHTPW 626
           DK  K    +   LL  L RAL DS  C  PW
Sbjct: 16  DKSWKVRFEAYESLLHALNRALDDSDVCFQPW 47


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 528 DAELPTSPTRPTAPDTHTSYKYW-QKLVSNQKFYYNILSVACKKN 397
           D ++ T PTR +APD   +   W Q+ + ++K +   + V   KN
Sbjct: 97  DDKIYTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGVEFPKN 141


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 586 SKSNNSRETEGIKSLCTLSRCRTAHQPDPP 497
           S++N S ETEG +S  + +R    H P  P
Sbjct: 191 SQTNLSDETEGSESSVSFNRLSRNHSPTRP 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,148
Number of Sequences: 5004
Number of extensions: 71006
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)