Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_A15
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1028 + 33920741-33920944,33921078-33921182,33921307-339214... 30 2.5
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135... 30 2.5
01_06_0549 + 30149016-30149761,30149922-30150088,30150236-301503... 30 2.5
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 29 4.4
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 29 4.4
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486... 29 4.4
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 5.8
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 29 5.8
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 7.7
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 7.7
>01_06_1028 +
33920741-33920944,33921078-33921182,33921307-33921444,
33921542-33921589,33921759-33921839,33921984-33922137,
33922653-33922759,33922861-33923076
Length = 350
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 721 DDSRSKNVGWRLXYFIXSDRLIPSVCDNVI 632
++ R N GWRL YF+ S+ + V D+ I
Sbjct: 236 ENQRITNKGWRLDYFLASESITDKVHDSYI 265
>01_06_1027 +
33912773-33912816,33913245-33913401,33913492-33913589,
33913680-33913775,33914422-33914681,33914778-33915088,
33915154-33915297,33915452-33915589,33915674-33915721,
33916328-33916408,33916705-33916864,33917411-33917532
Length = 552
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVI 632
++R N GWRL YF+ S+ + V D+ I
Sbjct: 506 NARKTNKGWRLDYFLVSESIAERVHDSYI 534
>01_06_0549 +
30149016-30149761,30149922-30150088,30150236-30150320,
30150499-30150658
Length = 385
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -3
Query: 549 SPCVLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQKFYYNILSVACKKNPG 391
+P P T+ TRP T T+ YW Y N+L+ A G
Sbjct: 131 TPSSPAPSRSSATTTTRPAPTTTATADGYWNDFAPRMDSYNNVLAKAIAAGTG 183
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 618 YGSDHCPIALFLN-LTTAEKPK 556
YGSDHCP++L L+ A KPK
Sbjct: 545 YGSDHCPVSLELSEEVEAPKPK 566
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 528 DAELPTSPTRPTAPDTHTSYKYWQKLVS 445
DA P P RP DT T++++W L +
Sbjct: 327 DAVPPVLPARPDYNDTATAHRFWSNLTA 354
>02_03_0127 +
15547048-15547302,15547511-15548459,15548562-15548677,
15548784-15548890,15550639-15550873,15550957-15551011,
15551802-15551893
Length = 602
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 459 ANIYNSYECREQLGGSGWWAVRHRDKVHKD 548
+++Y+ EC L S WW R + K KD
Sbjct: 507 SDLYDFIECNPSLDYSNWWTQRKKFKKFKD 536
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 540 HKDFIPSVSRLLLDLERALSDSGRCHTPWSRMTLSQTDGISLSEXMKXSKRHPT-FFERE 716
+K++ P V L LD+E AL S R H M+ + + +L E + P F E
Sbjct: 436 NKEYQPKV--LTLDVEAALPPSKRLHRALEAMSANVAETNNLPEVTGSKQLIPNGFVASE 493
Query: 717 SSCPSXSVRTRLVGVEXSEXVHNPXPT 797
+S + S + S +P P+
Sbjct: 494 NSHSNKSADAVVTATNGSAIAESPRPS 520
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 777 HXXTFPPRPDGFVHFXTDMMIPVRRTSD 694
H ++PP P+GF +F +M R +D
Sbjct: 241 HTNSYPPTPEGFGYFRNNMKCQEHRNND 268
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Frame = +3
Query: 525 HRDKVHKDFI-PSVSRLLLDLERALSDSGRC--HTPWSRMTL---SQTDGISL 665
HR K+H DF+ S+ LLL+ +LSD C H+ ++R L +DG+SL
Sbjct: 993 HRLKIHNDFLRASIPLLLLN---SLSDIDLCGEHSKFTRFRLKPFGTSDGLSL 1042
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 705 RTSDGVWXTS*XPTD*FRRSATTSSATK-VYGS--DHCPIALFLNLTTAEKPKE*SPCVL 535
RTS G+ P + + T + K +YG+ CP+ + N+T + K S CV
Sbjct: 766 RTSGGISKGKGFPGE--NGTVTGKACPKGLYGTFCKECPLGTYKNVTGSSK----SLCVQ 819
Query: 534 CPDAELP 514
CP ELP
Sbjct: 820 CPPDELP 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,770,260
Number of Sequences: 37544
Number of extensions: 465927
Number of successful extensions: 1141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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