Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A15
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X66133-1|CAA46925.1|  318|Homo sapiens AP endonuclease 1 protein.      47   7e-05
X59764-1|CAA42437.1|  318|Homo sapiens HAP1 protein.                   47   7e-05
U79268-1|AAB50212.1|  318|Homo sapiens apurinic/apyrimidinic end...    47   7e-05
S43127-1|AAB22977.1|  318|Homo sapiens Ref-1 protein.                  47   7e-05
M92444-1|AAA58629.1|  318|Homo sapiens apurinic/apyrimidinic end...    47   7e-05
M81955-1|AAA58372.1|  318|Homo sapiens apurinic/apyrimidinic end...    47   7e-05
M80261-1|AAA58371.1|  318|Homo sapiens apurinic endonuclease pro...    47   7e-05
D90373-1|BAA14381.1|  318|Homo sapiens apurinic/apyrimidinic end...    47   7e-05
D13370-1|BAA02633.1|  318|Homo sapiens APEX nuclease protein.          47   7e-05
BT020133-1|AAV38935.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BT007236-1|AAP35900.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BC095428-1|AAH95428.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BC019291-1|AAH19291.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BC008145-1|AAH08145.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BC004979-1|AAH04979.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
BC002338-1|AAH02338.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05
AF488551-1|AAL86909.1|  318|Homo sapiens APEX nuclease (multifun...    47   7e-05

>X66133-1|CAA46925.1|  318|Homo sapiens AP endonuclease 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>X59764-1|CAA42437.1|  318|Homo sapiens HAP1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>U79268-1|AAB50212.1|  318|Homo sapiens apurinic/apyrimidinic
           endonuclease protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>S43127-1|AAB22977.1|  318|Homo sapiens Ref-1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>M92444-1|AAA58629.1|  318|Homo sapiens apurinic/apyrimidinic
           endonuclease protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>M81955-1|AAA58372.1|  318|Homo sapiens apurinic/apyrimidinic
           endonuclease protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>M80261-1|AAA58371.1|  318|Homo sapiens apurinic endonuclease
           protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>D90373-1|BAA14381.1|  318|Homo sapiens apurinic/apyrimidinic
           endonuclease protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>D13370-1|BAA02633.1|  318|Homo sapiens APEX nuclease protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BT020133-1|AAV38935.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BT007236-1|AAP35900.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BC095428-1|AAH95428.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BC019291-1|AAH19291.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BC008145-1|AAH08145.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BC004979-1|AAH04979.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>BC002338-1|AAH02338.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) 1 protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


>AF488551-1|AAL86909.1|  318|Homo sapiens APEX nuclease
           (multifunctional DNA repair enzyme) protein.
          Length = 318

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSVCDNVIRDQGV 617
           ++RSKNVGWRL YF+ S  L+P++CD+ IR + +
Sbjct: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,660,551
Number of Sequences: 237096
Number of extensions: 2514713
Number of successful extensions: 8937
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8937
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)