Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A15
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease I...    33   0.24 
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    29   5.2  
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    29   5.2  
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    29   5.2  
AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 depende...    29   5.2  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z92830-10|CAB07363.1|  315|Caenorhabditis elegans Hypothetical p...    28   9.1  
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    28   9.1  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical
           protein R09B3.1a protein.
          Length = 288

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSV 647
           +SR K+VGWRL Y++ S+R++  V
Sbjct: 242 NSRQKDVGWRLDYYVVSNRIMNKV 265


>AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease III
           homolog protein.
          Length = 288

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 718 DSRSKNVGWRLXYFIXSDRLIPSV 647
           +SR K+VGWRL Y++ S+R++  V
Sbjct: 242 NSRQKDVGWRLDYYVVSNRIMNKV 265


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 543 CVLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQKFYYNILS---VACKKNPGNSLI 379
           C LCP  E PT+   P   D  T    +++  SN K+   + S   V C   PG + +
Sbjct: 54  CKLCPPTEAPTT-LAPCFDDKDTDCASFKQFCSNSKYIPMLKSFCPVTCNMCPGATTV 110


>Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical
           protein F55G11.2 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 488 GAVGRVGLVGSSASGQSTQGLYSFGFSAVVRFRKSAIGQWSLPYTLVADDVVADRRNQSV 667
           G VG  GLV ++    S  G Y  G   ++ F +      SL  TL+ +    D  N   
Sbjct: 141 GLVGTTGLVVNATETVSAMGFYIPGGLTLLSFPEDLKNYISLRSTLIFEGKNMDSANYIA 200

Query: 668 GXYEVXQ 688
             Y++ Q
Sbjct: 201 SLYQLYQ 207


>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 543 CVLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQ 439
           C LCP+ E    P+  T+P T    K  +KL  NQ
Sbjct: 187 CELCPEQETDGDPSPLTSPITEGKPKRGKKLQRNQ 221


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 543 CVLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQ 439
           C LCP+ E    P+  T+P T    K  +KL  NQ
Sbjct: 245 CELCPEQETDGDPSPLTSPITEGKPKRGKKLQRNQ 279


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 543 CVLCPDAELPTSPTRPTAPDTHTSYKYWQKLVSNQ 439
           C LCP+ E    P+  T+P T    K  +KL  NQ
Sbjct: 246 CELCPEQETDGDPSPLTSPITEGKPKRGKKLQRNQ 280


>AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 5 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 492 QLGGSGWWAVRHRDKVHKDFIPSVSRLLLDLERALSDSGRC 614
           +L G+ +W  RH DK+   F PS    ++D +  L D+ +C
Sbjct: 38  ELDGAIFWNCRHVDKIVNVFWPSTK--VIDCDINLFDNSKC 76


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 610 AAIHLGRG*RCRRPTESVCRXL*SXPNAIRRSSNGNHHVRXKVYE 744
           +A+ LG    C +  + V R     P +IRRSSN N  +  KV +
Sbjct: 186 SAVKLGSKADCTKAKDDVQRKTARDPTSIRRSSNHNLPLSVKVMD 230


>Z92830-10|CAB07363.1|  315|Caenorhabditis elegans Hypothetical
           protein F11A5.12 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 424 IIVKFLIRHKFLPIFITRMSVGSSWAGRAGGQFGIGTKYTRTLFLR 561
           II+  L+ + F      +   G+SWA   G   GIG  Y+  L  R
Sbjct: 25  IILNILVPYAFCQPIDLKKKAGASWAVVTGATDGIGKSYSFELARR 70


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 170 FLTFFEIFKHTCTNPLFRFKE*TTV--IITYNVFNGSRFKVRGGITTSHIVGLTLIGGVL 343
           F TF ++F       LF +   T+   +   NV  GS+F+  G   T H V  TL  G L
Sbjct: 57  FATFKKVFAKNANKNLFDYSNLTSKKDVFYKNVQIGSKFEGEGLDNTKHEVTFTLKDGHL 116


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 40  VTKQNVSVHI--FAIYQRNVKSQNHLSFFFKLKYKITNHELPWLNVFNIFRNF 192
           V K+ +  H+    ++ ++  +QN LS   K K K+T   +P+  V  +F NF
Sbjct: 3   VGKKQMEAHLEHAELFIKSHINQNKLSIKDKFKKKLTMFSIPFALVLLLFENF 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,878
Number of Sequences: 27780
Number of extensions: 415431
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)