Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A12
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                      141   6e-34
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   2e-29
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                       112   3e-25
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                      101   1e-21
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   5e-11
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             33   0.29 
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   3.3  
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)               29   3.6  
SB_1024| Best HMM Match : Ank (HMM E-Value=0)                          29   4.8  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   28   8.4  

>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score =  141 bits (342), Expect = 6e-34
 Identities = 71/142 (50%), Positives = 89/142 (62%)
 Frame = -2

Query: 746 FXGERXMTKDNXLXQ*XELTGIPPAPRGVPQIEVTXDXDANGIXNVXXXXXXXXXXXXXX 567
           F GER MT  N L    ELTGIPPAPRGVPQIEVT D DANGI NV              
Sbjct: 445 FEGERSMTAHNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKIT 504

Query: 566 XXXTKVVSPRKRSSVWLMRQRSTEXEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKI 387
               K    ++     +      + ED+KQ++ IQ KN+LESY +SMKST+ED+K+K+KI
Sbjct: 505 ITNDKGRLSKEDIERMVNEASKYKEEDEKQRDRIQTKNSLESYAYSMKSTVEDDKVKDKI 564

Query: 386 SDSDKQTILDKCNDTIKWLDSN 321
           S+ DK+ ILDKC + +KWLD+N
Sbjct: 565 SEEDKKAILDKCTEVLKWLDTN 586



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -3

Query: 331 WIPTSWPX-KEEYEHKQKELEGIYNPIITKMYQ 236
           W+ T+    K+E+E+ QKELE + NPIITK+YQ
Sbjct: 582 WLDTNQTAEKDEFEYHQKELEKVCNPIITKLYQ 614


>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score =  126 bits (304), Expect = 2e-29
 Identities = 61/142 (42%), Positives = 86/142 (60%)
 Frame = -2

Query: 746 FXGERXMTKDNXLXQ*XELTGIPPAPRGVPQIEVTXDXDANGIXNVXXXXXXXXXXXXXX 567
           + GER +TKDN L    EL+GIPPAPRGVPQI+VT D D+NGI NV              
Sbjct: 537 YEGERSLTKDNNLLGKFELSGIPPAPRGVPQIDVTFDVDSNGILNVSAVDKSTGKENKIT 596

Query: 566 XXXTKVVSPRKRSSVWLMRQRSTEXEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKI 387
               K    ++     +      +  D+  +E IQ+KN+LESY FSMKSTMEDEK+K+K+
Sbjct: 597 ITNDKGRLSKEDIERMVKEAEKFKAADEAVRERIQSKNSLESYAFSMKSTMEDEKVKDKL 656

Query: 386 SDSDKQTILDKCNDTIKWLDSN 321
           S+ +++ ++ +C  T+ WL+ N
Sbjct: 657 SEDEREKVISRCKATLDWLEHN 678



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -3

Query: 307 KEEYEHKQKELEGIYNPIITKMYQ 236
           KEE +  QKELEG+ NPIITK+YQ
Sbjct: 683 KEEIDAHQKELEGVCNPIITKLYQ 706


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score =  112 bits (270), Expect = 3e-25
 Identities = 58/142 (40%), Positives = 78/142 (54%)
 Frame = -2

Query: 746 FXGERXMTKDNXLXQ*XELTGIPPAPRGVPQIEVTXDXDANGIXNVXXXXXXXXXXXXXX 567
           F GER +TK N L    +L+GIPPAPRGVPQIEVT D DANGI NV              
Sbjct: 444 FEGERPLTKHNNLLGKFDLSGIPPAPRGVPQIEVTFDIDANGILNVSAKDKSTGKTGSIT 503

Query: 566 XXXTKVVSPRKRSSVWLMRQRSTEXEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKI 387
               K    ++     +      + ED+ Q+E I A+N LESY F +KS + +  L+ K+
Sbjct: 504 ITNDKGRLSKEEIDRMINDAEKYKSEDEAQREKIAARNRLESYAFGVKSAISEPSLEGKL 563

Query: 386 SDSDKQTILDKCNDTIKWLDSN 321
           S SDK T+ +K  + + WL+ N
Sbjct: 564 SQSDKDTVKNKVEEVLNWLEKN 585



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 331 WIP-TSWPXKEEYEHKQKELEGIYNPIITKMY 239
           W+   S   KEE+E ++KEL+ + +PI+ K++
Sbjct: 581 WLEKNSLAEKEEFEEQEKELQRVCSPIMAKVH 612


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score =  101 bits (241), Expect = 1e-21
 Identities = 57/143 (39%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
 Frame = -2

Query: 746  FXGERXMTKDNXLXQ*XELTGIPPAPRGVPQIEVTXDXDANGIXNVXXXXXXXXXXXXXX 567
            F GER MTKDN      +L GIPPAPRGVPQIEVT + D NGI  V              
Sbjct: 1138 FEGERPMTKDNHPLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILRVSAEDKGTGNKEKIT 1197

Query: 566  XXXTKVVSPRKRSSVWLMRQRSTEXEDDKQKETIQAKNALESYCFSMKSTMED-EKLKEK 390
                +     +     +        ED K KE ++A+N LESY +S+K+ + D EKL  K
Sbjct: 1198 ITNDQNRLTPEDIERMVNDAEKFADEDKKTKEKVEARNELESYAYSLKNQVGDKEKLGGK 1257

Query: 389  ISDSDKQTILDKCNDTIKWLDSN 321
            +S+ DK+TI +     I W+D N
Sbjct: 1258 LSEDDKKTITEAVEKAISWMDKN 1280



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = -1

Query: 600  EKSTNKENKITITNDKGRLSKEEIERMVNEAEKY 499
            +K T  + KITITND+ RL+ E+IERMVN+AEK+
Sbjct: 1187 DKGTGNKEKITITNDQNRLTPEDIERMVNDAEKF 1220


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 31/46 (67%), Positives = 33/46 (71%)
 Frame = -2

Query: 746 FXGERXMTKDNXLXQ*XELTGIPPAPRGVPQIEVTXDXDANGIXNV 609
           F GER M  DN L    +L GIPPAPRGVPQ+EVT D DANGI NV
Sbjct: 249 FQGEREMAIDNKLLGQFQLVGIPPAPRGVPQVEVTFDIDANGIVNV 294



 Score = 35.9 bits (79), Expect = 0.042
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = -1

Query: 600 EKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRXRG*QAK 475
           +K T +E +I I +  G LSK+ IE M+ EAEKY     Q K
Sbjct: 298 DKGTGREQQIVIQSSGG-LSKDAIENMIKEAEKYAEADKQKK 338


>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = -2

Query: 509 QRSTEXEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKIS-DSDKQTILDKCNDTIKW 333
           + + +  DD +    +AKNALES+ F ++  M  E L EK+S +++++TI +       W
Sbjct: 703 KEAPKARDDAKAANERAKNALESHIFGVRDEMNSE-LGEKLSTEAERETISEALTAASDW 761

Query: 332 LDSN 321
           LD +
Sbjct: 762 LDED 765


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 515 MRQRSTEXEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIK 336
           +R   +    D QKE  QA   +E Y  S++   E    KE +  S+K+ + ++C + IK
Sbjct: 10  VRHEESTRAGDLQKEVTQASENIEKYSQSIRDLGE----KENVLTSEKKQLEEECQENIK 65


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 24.2 bits (50), Expect(2) = 3.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 261 IR*LRRCTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPS 136
           IR +    R PE+  EV   S +       P   L+ L PPS
Sbjct: 20  IRNIMSRRRFPEDDLEVSSVSASASSSTSRPTNALQPLKPPS 61



 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 150 LAPPSRRSIKPTFHTTLKPTCNNH 79
           L PPSR+S  P  HT   P+C ++
Sbjct: 80  LTPPSRQSNNPRPHT--PPSCQSN 101


>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
          Length = 86

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 186 PEPEVPPPGLEALAPPSRRSIKP-TFHTTLKPTCNNHLVTSP 64
           P+P+ PPPG     PPS  +  P T     +P      VT P
Sbjct: 28  PKPDTPPPGTNIPTPPSPNTPPPVTQPPVTQPPVTQPPVTQP 69


>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
          Length = 891

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 231 PEESP--EVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPT 115
           PE+ P  EV  A R E P+ E  PP     +PP ++  KPT
Sbjct: 771 PEQPPIGEVESAVRREQPKSEKTPPSTTP-SPPPKQPSKPT 810


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 172  HLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCLPILSACAHTPPXSASWLES---SHLM 342
            HL +RVL P  P     L         LS C CLP+  +C H      S + S   + L 
Sbjct: 1177 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVHLSVRVRSPVCSRAFTCLS 1232

Query: 343  VSLHLSRMVC 372
              +HLS  VC
Sbjct: 1233 ACVHLSVRVC 1242


>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 222 SPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 67
           S + C    A+ P   +    L+   P S  S +PT   TL   CNN   TS
Sbjct: 417 SEQYCYFGDAKVPATFMNDTTLKCTVPTSSVSSRPTVAVTLNGGCNNFTTTS 468


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 678 TGAAWRASN*GHLXHXCQRYXQRFXIEKSTNKENKITITNDKGRLS--KEEIERMV 517
           T   W+A + GH  H    + +         K +K+ I  D+GR+S  KE IE ++
Sbjct: 233 TDIDWQAQHLGHDVHMHHEFYRLHESTAELAKVSKLLIAVDEGRISHLKEAIEVLI 288


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 210 CRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPT 91
           C A  A+ P+ +VPPP     APP   +  P   TT  PT
Sbjct: 92  CNAKPAQ-PDTDVPPPPATTSAPPPPTTTAPP-ATTSPPT 129


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 222 SPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTSP 64
           S + C    A+ P   +    L+   P S  S +PT   TL   CNN   TSP
Sbjct: 84  SEQYCYFGDAKVPATFMNDTTLKCTVPTSSVSSRPTVAVTLNGGCNN-FTTSP 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,366,204
Number of Sequences: 59808
Number of extensions: 406946
Number of successful extensions: 1716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)