Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A10
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   3.2  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    26   5.5  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   7.3  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   9.7  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 LFFCTSTVKCSIKKNNYIHGWI*VLLY 220
           +FF   +VKC + +    HGW+  L+Y
Sbjct: 361 VFFEMQSVKCKVAQEIQDHGWLKKLIY 387


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 706 DIDQIFCDAVQMCEHSV 656
           DIDQIFC +++ C  ++
Sbjct: 46  DIDQIFCSSMKRCRETI 62


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 646 CGALLFDAVFLYHSFVLVSETEMLWYNVKINVTLRNISGKCYF 518
           CG   F    +   FVL   T +  +NV +N   ++ SGK  F
Sbjct: 132 CGFQTFLDTVILSLFVLCGLTRLARFNVSVNSIPKDGSGKSQF 174


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 616 KILHQTIRLRNQLSRCVRTFAQRHKIFDQCHLRIRSS 726
           KI + TI LRN+    + T  Q   +F+Q ++ + SS
Sbjct: 496 KICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSS 532


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 444 FECYVTSMLCSCNFRFSPG 388
           F+C V ++ C C F FS G
Sbjct: 39  FDCIVVTIYCGCLFWFSNG 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,735
Number of Sequences: 5004
Number of extensions: 52559
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)