Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A10
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)                 29   3.4  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)
          Length = 298

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 607 SFVLVSETEMLWYNVKINV-TLRNISGKCYFLILLT 503
           SFV+ SE+E  ++NVK N  TL  + G  +FL   T
Sbjct: 146 SFVMFSESESAYFNVKRNENTLAIVDGLVHFLTCYT 181


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 656 HAVFAHLHSVTKYLIN-VT*EYDHLYNKFXDPQSAL-TXERL 775
           HA FA+LH+VT Y  + V  E+   Y  F +P++ + T ER+
Sbjct: 378 HATFAYLHAVTCYNTSFVKGEHMDYYWNFANPRNIVSTKERI 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,057
Number of Sequences: 59808
Number of extensions: 372961
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)