Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_A05
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 30 2.1
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 30 2.1
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 30 2.1
01_01_0190 + 1656376-1656565,1656655-1657388 29 3.7
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 29 6.4
09_03_0006 + 11426346-11426420,11426733-11427452 29 6.4
02_01_0503 + 3669758-3670059,3670351-3670870 29 6.4
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 8.5
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = -1
Query: 564 CKVFLHLLDTDKESNIKAVCQLLKLSGLALDADCPTGMHATFERLRRRGSLPLVRAVLDL 385
C L ++ +D E+N++++ L+ L+AD M A E+ +R ++A L
Sbjct: 595 CSAHLSII-SDLEANVESLENELQEQSKRLEADIQEVMRAKVEQEQR-----AIKAEESL 648
Query: 384 RAARWGLADTSHQHVGGMNGGSDYVEGGFLADGHSL--TAEERAFLQ 250
R ARW A T+ + S V F A+ L +E A LQ
Sbjct: 649 RKARWNNATTAERLQEEFKMLSSQVSSAFSANEQLLMQARKEAAELQ 695
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 393 LDLRAARWGLADTSHQHVGGMNGGSDYVEGGFLADGHSL-----TAEERAFLQSN 244
LD AA G AD S +H+ GG D +G + + H+L T F+Q+N
Sbjct: 342 LDAAAASPGDADGSRRHIVSFIGGIDLCDGRYDDENHTLFRDLDTTYRHDFMQNN 396
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 414 LPLVRAVLDLRAA--RWGLADTSHQHVGGMNGGSDYVEGGFLADGHSLTAE 268
LP RAVLDL AA W +H VG G D V + HSLT +
Sbjct: 40 LPTARAVLDLCAAPGGWVQVAVNHAPVGAFVVGVDLVPIRPIRGAHSLTED 90
>01_01_0190 + 1656376-1656565,1656655-1657388
Length = 307
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 206 ISSSMGWCLCGGRLLCRKARSSAVSE*PSARKPPST*SDPPFMPPTC 346
+ S+G G LC+ A S + P A+ PPS + PP PTC
Sbjct: 81 VYGSVGLLWSGNWQLCQSAVESVLRGMPIAQPPPSATAVPPL--PTC 125
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 546 LLDTDKESNIKAVCQLLKLSGLALDADCPTGMHATFERLR 427
LL+ + +++ +K G L P G+HA FER R
Sbjct: 359 LLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFR 398
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 6.4
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 235 RRQVALQEGALLGGQRVTVRQETALYVIRPAVHAANVLVRGVGEPPAGRAQVEHGAHERQ 414
RR AL+ R R+ T L + V L PP R V H +
Sbjct: 64 RRPPALRRCCAAWRHRTRKRRRTRLCSL--LVTGVVDLCSDSASPPVLRLAVGHRCPDSS 121
Query: 415 RPAPPEPLERRVH---PRRAVRVEGQTRQL 495
P+PP+P R H P A+ G+T L
Sbjct: 122 APSPPQPGALRWHRRPPSTALPPHGETAPL 151
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 394 HGAHERQRPAPPEPLERRVHPRRA 465
H AH Q PP P RR+ PR A
Sbjct: 8 HAAHRSQIEIPPRPPSRRLPPRTA 31
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 LLISVQ*MQKNFAETFTEKSLFFLLDYPQ-AEYKSXARNIANPRIFSS 666
+L++V+ +++ FT+ F D P A+Y A +ANPR+ +S
Sbjct: 897 VLVNVEVAEESITGRFTDDMTPFQEDLPDGAKYSEDAEFLANPRVDNS 944
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,223
Number of Sequences: 37544
Number of extensions: 368199
Number of successful extensions: 1328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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