Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A05
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               31   1.6  
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 253 QEGALLGGQRVTVRQETALYVIRPAVHAANVLVRGVGEPPAGRAQVEHGAHERQRPAPPE 432
           ++G  LG    T   +  L+   P   ++++ V G   PPAGR     G  + Q    P+
Sbjct: 8   EKGGGLGVGLATTPCQKILFTETPTAKSSDITVLGEDGPPAGRCMTSGGESQNQEAVRPK 67

Query: 433 PLERRV 450
            +   +
Sbjct: 68  TISTTI 73


>SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 280 RVTVRQETALYVIRPAVHAANVLVRGV-GEPPAGRAQVEHGAHERQRPAPPEPLERRVHP 456
           +V + Q T+ Y +R       + +RGV  EP   RA  E   H+RQ   P    E+ V  
Sbjct: 134 QVVIVQTTSFYALRTTPEPFPMEIRGVPSEPKLHRAFHERSRHKRQFQFPERQPEKFVDS 193

Query: 457 RRAVRV 474
              V V
Sbjct: 194 NNFVSV 199


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +1

Query: 319  RPAVHAANVLVRGVGEPPAGRAQVEHGAHERQRPAPPEPLERRVHPRRAVRVEGQTRQLE 498
            RPA     V  +G  E    +A+ +  A +  RPAPP P   R  P  AV+ +G+  Q+ 
Sbjct: 1177 RPAPPRPTVPSQGRSEGDKIQAEGDKDAVKPSRPAPPAP---RRPPPPAVKQDGEKEQVM 1233

Query: 499  QLT 507
             +T
Sbjct: 1234 NMT 1236


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 83   VPLSGAVIALSDSIS*ETRGSSPAFQDPFQSPTSRSQAPPXISSSMGWCLCGGRLLCRK 259
            V +SG       SIS   RG++ A   PF SPT+   +PP    S+       R +C K
Sbjct: 1172 VIVSGLHACAEYSIS--VRGNTSAGGGPFSSPTALQTSPPGAPRSLKLISADKREVCLK 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,672,163
Number of Sequences: 59808
Number of extensions: 356161
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)