Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A05
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    29   5.7  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    29   5.7  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 370  PAGRAQVEHG--AHERQRPAPPEPLE-RRVHPRRAVRVEGQTRQLEQLT 507
            PAG+  V  G  ++E   PAPP+P+E  +V P   +  E   +Q+ Q T
Sbjct: 3212 PAGKT-VRFGPISYEPPEPAPPQPVEIPKVEPTPEISFESLAQQMAQKT 3259


>Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical
           protein F12F6.5 protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 315 YVEGGFLADGHSLTAEERAFLQSNLPPHKHQPID 214
           Y++G F+ +   ++ ++ A  + +LPP +H  ID
Sbjct: 732 YMDGNFIEENDLISEDDEAHEKLSLPPSRHMMID 765


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 346 LVRGVGEPPA--GRAQVEHGAHERQRPAPPEPLER-RVHPRRA 465
           LVRG G PPA  GR Q E     R+   PP+ +E+ +V   RA
Sbjct: 331 LVRGTGRPPAEWGRKQNEELEQIRKNLEPPKYVEQVKVEGARA 373


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 346 LVRGVGEPPA--GRAQVEHGAHERQRPAPPEPLER-RVHPRRA 465
           LVRG G PPA  GR Q E     R+   PP+ +E+ +V   RA
Sbjct: 331 LVRGTGRPPAEWGRKQNEELEQIRKNLEPPKYVEQVKVEGARA 373


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 200 EELENDSWETGMDPEMQESFLEFLKI 123
           E+ EN S ETG+DPE++ S LE+++I
Sbjct: 64  EKRENCS-ETGLDPEVRGSPLEYIQI 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,794
Number of Sequences: 27780
Number of extensions: 263425
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)