Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A05
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    31   0.76 
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    29   3.1  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   7.1  
At5g17210.1 68418.m02016 expressed protein                             28   9.4  

>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = +1

Query: 232 VRRQVALQEGALLGGQRVTVRQETALYVIRPAVHAANV-LVRGVGEPPAGRAQVEHGA-- 402
           V R + L+ G+ +GG+R+TV+Q       RP++         G+  P   + Q +     
Sbjct: 74  VNRAIELKNGSTVGGRRITVKQAAH----RPSLQERRTKAAEGISVPDNSQGQSDKDTSI 129

Query: 403 -HERQRPAPPEPLERRVHPRRAVRVEGQTRQLEQLTNSFDV*LLISVQ*MQKNFAETFTE 579
               ++ +PPE    +   R+ V    + +Q+E+          I ++ ++K F     E
Sbjct: 130 PETDEKVSPPEKKLEKPVERKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVE 189

Query: 580 K 582
           K
Sbjct: 190 K 190


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 101 VIALSDSI--S*ETRGSSPAFQDPFQSPTSRSQAP 199
           V ALS+S+  S    GS P F+DP Q   + SQAP
Sbjct: 8   VFALSNSMASSRPLLGSDPFFRDPHQEQDNHSQAP 42


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 99   RLSLYLIRYLEKLEEALLHFRIHSSLPRVVLKLLQXYRRL 218
            RLS +L     KL +  LH  +H  + +V   LL   RRL
Sbjct: 1793 RLSWWLCSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRL 1832


>At5g17210.1 68418.m02016 expressed protein
          Length = 209

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 80  RVPLSGAVIALSDSIS*ETRGSSPAFQDPFQSPTSRSQAPPXISSSMGWCLC 235
           R+  S   + +SDSI+  T   SPAF   F S      A   +S S G C C
Sbjct: 30  RIKRSQVTVTVSDSITKCTYPRSPAFNLGFTSALFLMMAQIIVSVSSG-CFC 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,334
Number of Sequences: 28952
Number of extensions: 260857
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)