Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_A03
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 74 2e-14
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.3
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 2.4
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 2.4
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 27 3.1
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.1
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 5.4
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 26 7.2
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 74.1 bits (174), Expect = 2e-14
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = -1
Query: 706 EKLTPRTIPFGMLNTNXPEELAK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNST 530
E P ++ + PE+L + VFM+ NLI G FQRL+ RK F + GE+ ++T
Sbjct: 287 EHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNT 346
Query: 529 ISGVWVWRGKELV--FPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRK 356
I+G +V +G + V F ++ DW SY + KLD + E K ++D ++W+ +GR+
Sbjct: 347 ITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGRE 401
Query: 355 FNQGKIFK 332
GK+ K
Sbjct: 402 VADGKVCK 409
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 402 SRTTSRGTEPTKTVESSTRARYSSECRPTSS 310
S TTS T + T+ SSTR+ +SE TSS
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 469 QVDYESYDWKKLD 431
QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 501 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 346
R S S R+I T P R++ ++ +N T EP +TVE TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 510 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 623
+ H P V+ L+ PN + CL IL WN PV+ L
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 243 IYI*MFLFCKVFYSYCMKCVYIGWTLVGIHLNILPWLNFLPSLSVPFHEK 392
+YI M + +FY Y +G ++GI + IL L P + V + +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 5.4
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Frame = -1
Query: 781 KPKVLQHDXSXXYSNETELXYSXLLEKLTPRTIPFGMLNTNXPEELAKVFMSCNLITGMF 602
KP + Q +NE ++ YS LE+ I G A + L +F
Sbjct: 12 KPNLQQQKFEAINANEDQIDYSSNLEQNYNSLIRQGSDQVIPLSRFASEKSALELEKELF 71
Query: 601 -QRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPS 425
+R+ + Q+ A L E++ + + V G+ + SSD + + S D K+L+ +
Sbjct: 72 SERIPE--SQSAAEPVLKVENSENDLDEKLVLDGQHVEGDHSSDTEEEVVSEDQKQLNKT 129
Query: 424 SEET 413
+E+
Sbjct: 130 DDES 133
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -3
Query: 434 GSFERGDQETCPGLLLVERNRQRR*KVQPGQDIQVNADQRPANVYTFHTITIKNFTKKKH 255
G F GD++ PG+L V +N Q K Q G ++ + N H + + N
Sbjct: 172 GLFGPGDRQLVPGMLSVLKNGQT--KFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNP 229
Query: 254 SNVNRWMLAIFGTVLNLYNF 195
+ + G V+ ++F
Sbjct: 230 TANGQVFFITNGQVIYFWDF 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,907
Number of Sequences: 5004
Number of extensions: 71898
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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