Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_A02
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 60 3e-10
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 59 8e-10
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.4
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 4.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 9.6
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 9.6
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 9.6
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = -2
Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 382
GS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Query: 381 KAMLKLNPYAAVXEEESYLRAAQKEELEG 295
+ +LNPYA + L + + G
Sbjct: 325 AVLARLNPYAKAYKANVKLNTGKTPKAAG 353
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1
Query: 625 PGXHXGRXVIWTQSAFGRLD 566
PG H GR VIWT+SAFG LD
Sbjct: 242 PGGHLGRFVIWTKSAFGLLD 261
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 58.8 bits (136), Expect = 8e-10
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = -2
Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 382
GS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Query: 381 KAMLKLNPYA 352
+ +LNPYA
Sbjct: 325 AVLSRLNPYA 334
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1
Query: 625 PGXHXGRXVIWTQSAFGRLD 566
PG H GR VIWT+SAFG LD
Sbjct: 242 PGGHLGRFVIWTKSAFGLLD 261
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -2
Query: 534 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 355
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 354 AAVXEEESYLRAA 316
+ +++ +++
Sbjct: 788 PQITVKQNTTKSS 800
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 378 AMLKLNPYAAVXEEESYLRAAQKEELE 298
A+LK + Y ++ EEES R ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 352 RVRIEFQHRLVVSERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLRLGQ 513
+V +EF+ RL + +RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 570 LTPXXGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEI 454
+ P + PS+ K ++P PKM +TD L S+ +
Sbjct: 241 IAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 193 ASLMFLRLLS--RGFSAFIAGFRLDSF 267
ASL+F L++ G++AFI GF+ SF
Sbjct: 460 ASLIFTGLITFFNGYNAFIHGFKYRSF 486
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Frame = -2
Query: 525 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 379
KNF + M+ ++ +L DE+R + R +K +I +++ + L N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195
Query: 378 AMLKLNPYAAVXEEESYLR 322
L + + + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,947
Number of Sequences: 5004
Number of extensions: 32657
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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