Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A02
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           79   5e-15
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    76   3e-14
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351...    28   7.6  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 37/82 (45%), Positives = 54/82 (65%)
 Frame = -2

Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 376
           G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N  A
Sbjct: 270 GTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAA 329

Query: 375 MLKLNPYAAVXEEESYLRAAQK 310
           +LKLNPY     + + L  A +
Sbjct: 330 VLKLNPYFGTARKMATLAEAAR 351



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 625 PGXHXGRXVIWTQSAFGRLDPFXXVME-DTIKTKEELQPAP 506
           PG H GR VIWT+SAF +L+      E  ++K K  + P P
Sbjct: 247 PGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRP 287


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 52/82 (63%)
 Frame = -2

Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 376
           G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + NPL N  A
Sbjct: 269 GGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAA 328

Query: 375 MLKLNPYAAVXEEESYLRAAQK 310
           +LKLNPY     + + L  A +
Sbjct: 329 VLKLNPYFGTARKMAALAEAAR 350



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 625 PGXHXGRXVIWTQSAFGRLDP-FXXVMEDTIKTKEELQPAP 506
           PG H GR VIWT+ AF +LD  +       +K K  + P P
Sbjct: 246 PGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRP 286


>09_06_0015 -
           20234231-20234344,20234846-20234902,20234968-20235111,
           20235581-20235745,20235817-20236005,20236086-20236326,
           20236412-20236512,20236704-20237241,20238101-20238132,
           20238677-20238760
          Length = 554

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
 Frame = -2

Query: 612 LDXXSFGLSPHSAGLTPXXGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAP 433
           L+   FG  P          S ++PS      + P P +    L R  + DE    L+A 
Sbjct: 347 LEAAMFGGIPEGPMYPFSMPSHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQAD 406

Query: 432 NKRVIRATR--KLNPLTNNKAMLKLNPYAAVXEEESYLRAAQKEELEGS 292
            ++ ++A +  +L  L    A           EEE   +  ++EELE S
Sbjct: 407 QEKELKALQEAELRRLEETAAREAALEKQKQEEEERRKKQLEEEELESS 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,968
Number of Sequences: 37544
Number of extensions: 257799
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)