Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A02
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    62   5e-10
AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    29   3.0  
AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical ...    29   3.0  
Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    29   5.2  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    29   5.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = -2

Query: 537 SKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 358
           S+ KK +++P P MAN+D +R+++S+E+ K +RAP K  +      NPL     + KLNP
Sbjct: 271 SQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNP 330

Query: 357 YAAVXEEES 331
           YA++  + S
Sbjct: 331 YASILRKAS 339



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 625 PGXHXGRXVIWTQSAFGRLD 566
           PG H GR +IWT+SAF +LD
Sbjct: 241 PGGHLGRLIIWTESAFKKLD 260


>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -2

Query: 528 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAA 349
           K ++N   P    TD    +    + K+L A    V   ++KL  L + +  +  N Y  
Sbjct: 23  KMSYNPKSPIF--TDFPDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDERYRVIKNVYMQ 80

Query: 348 VXEEESYLRAAQKEELEGSC*C 283
           V +EE+ L     EELE +  C
Sbjct: 81  VQDEEAILFFENHEELEKTFSC 102


>AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical
           protein Y18H1A.2 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 350 PXLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKPRER 216
           P LKRK + E R+RK  +  +D+E+   K  K++   K +K R R
Sbjct: 148 PCLKRKELEEERKRK--REDSDSEEKAKKRHKKDKKKKKKKHRHR 190


>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 362 ILTRPXLKRKAILELRRRKNLKALADAEKSGLK-LSKRNPAMKAEKPRERRRKN 204
           ++ RP    K + +++R K  +    + KS LK   KRN A  +E+P++  RK+
Sbjct: 341 VMRRPESTEKELAKMKREKRERR---SMKSALKTFFKRNDAKISEQPKQTSRKD 391


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 362 ILTRPXLKRKAILELRRRKNLKALADAEKSGLK-LSKRNPAMKAEKPRERRRKN 204
           ++ RP    K + +++R K  +    + KS LK   KRN A  +E+P++  RK+
Sbjct: 341 VMRRPESTEKELAKMKREKRERR---SMKSALKTFFKRNDAKISEQPKQTSRKD 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,537
Number of Sequences: 27780
Number of extensions: 206165
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)