Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A02
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    79   5e-15
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    71   7e-13
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    29   4.8  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   8.4  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = -2

Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 376
           GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL N   
Sbjct: 271 GSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNV 330

Query: 375 MLKLNPYAAVXEEESYLRAAQK 310
           MLKLNPYA   +  S L  AQ+
Sbjct: 331 MLKLNPYAKTAKRMSLLAEAQR 352



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 625 PGXHXGRXVIWTQSAFGRLDPFXXVMEDTIKTKE 524
           PG H GR VIWT+SAF +L+      E   + K+
Sbjct: 248 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKK 281


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 35/82 (42%), Positives = 48/82 (58%)
 Frame = -2

Query: 555 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 376
           GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NPL N   
Sbjct: 272 GSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNV 331

Query: 375 MLKLNPYAAVXEEESYLRAAQK 310
           M KLNPYA   +  S L  A +
Sbjct: 332 MFKLNPYAKTAKRMSLLAEASR 353



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 625 PGXHXGRXVIWTQSAFGRLDPFXXVMEDTIKTKE 524
           PG H GR VIWT+SAF +L+      E   + K+
Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKK 282


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 344 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKPR-ERRRK 207
           L+ K + E+  RK L  L  AEK   K ++     K E+ + ERRRK
Sbjct: 219 LEAKRMEEVNERKRLMFLRKAEKEEEKRAREKIRQKLEEDKAERRRK 265


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 101 RPFQLSASYLPSSWEEAGSS*QPASWVS 184
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,181
Number of Sequences: 28952
Number of extensions: 190983
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)