Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P24
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              29   6.2  
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)                   28   8.2  
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 553 SVPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 446
           SV CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 485 QHGPSRRTTRKHCSTTHRPTWDG-TRHD*WLHRAQSSD 595
           QH  ++ +T +H +T H  TW   T+HD   H     D
Sbjct: 92  QHSTTQHSTTQHSTTQHDTTWHSKTQHDTARHSTARHD 129


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
 Frame = +3

Query: 288 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 467
           + T +   +   Y TN  Y+  D +++ ++  T   L     L       + RRL     
Sbjct: 70  YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129

Query: 468 AQHADDSMDP--LDVPQGSTAPQRTARHGTEH 557
            QH   +  P     P  +TAP  T     ++
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDY 161


>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 383

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 549 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRC 659
           + H+   GCI     TF W P+   E+K++I E   C
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVC 168


>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 549 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRC 659
           + H+   GCI     TF W P+   E+K++I E   C
Sbjct: 330 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVC 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,205,720
Number of Sequences: 59808
Number of extensions: 539966
Number of successful extensions: 1651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)