Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P22
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   3.2  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    27   3.2  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   4.3  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.3  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   7.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   9.8  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   9.8  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   9.8  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   9.8  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 429 SGTAPVINANLKDFDFVQKC 370
           S + P+I+ NL+DF F ++C
Sbjct: 373 SNSIPLISRNLRDFSFFKRC 392


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NANLKDFDFVQKCNPNPAVQKTESIITK 325
           N   +D DF +K  P PA+ K E++  K
Sbjct: 231 NIAAEDLDFFKKSPPVPAISKKENVALK 258


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 29  SKLTQRMHSPISLITLIWICASKILSLLNT-----NWRSHE*DTHRKRCSGVILHHNT 187
           S++ ++  +P  L T + +C S+ LSL  T        S+E DTH    + ++L  NT
Sbjct: 210 SEVNKQFKNP-DLTTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNT 266


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 509 ACLSSTHLRRWWFLETLTLITKSGWGPEPLTSRVGLPTISPW 634
           A  SST L   W L+   L   + + P P+  ++  PT+  W
Sbjct: 17  AISSSTFLWSTWVLQRTILKRPNFFSPNPVVEKMVHPTLITW 58


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 166 CYSTPQHATSSSILYFHLSICRLPSVS 246
           CY  PQH   S I   + ++C L + +
Sbjct: 360 CYEPPQHVPGSGIAKVNRAVCMLSNTT 386


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 164  HYISSGECLTHEIANWY 114
            HY+S    + HE+ NWY
Sbjct: 996  HYLSEINFIEHELDNWY 1012


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 423 TAPVINANLKDFDFVQKCNPNPAVQKTESIITKSNKPSNS*LI 295
           T  V+ ++  DF+ + K  P  A      I+  S KP  + L+
Sbjct: 10  TGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALV 52


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 553 LQEPPPPQMGTAQARG*SPLAHAL 482
           L  PPPP   T   R  +PL+H +
Sbjct: 19  LLNPPPPSSSTRSGRLFAPLSHTM 42


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/16 (68%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = +1

Query: 238 SVSI-NVYGYFPKEFF 282
           S+SI N++G FPKEFF
Sbjct: 28  SLSIENIFGRFPKEFF 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,471
Number of Sequences: 5004
Number of extensions: 75694
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)