Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P22
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.48 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.64 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 23  YTSKLTQRMHSPISLITLIWICASKILSLLNTNWRS 130
           Y SK+++R  +   LI ++WIC+S I       WR+
Sbjct: 154 YPSKMSRRRAAV--LIAIVWICSSAISFPAIVWWRA 187


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 178 PQHATSSSILYFHLSICRLPSVSINVYGYFPKEFFS 285
           P+    ++++YFH+++  L S+  N   Y    FF+
Sbjct: 54  PKKDGQATVVYFHVTVMGLDSIDENSMTYAADIFFA 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 544  PPPPQMGTAQ 515
            PPPP+MG+A+
Sbjct: 1702 PPPPRMGSAE 1711


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 505 NRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLP 606
           N +L+++ S   V+LG+ + HH+ +    +T+ P
Sbjct: 509 NPLLQEHDS---VMLGEISPHHEYYDSKSSTETP 539


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 427 RVYACLYRSHSSDAGSALIEHVQEGTNR 510
           +V+ C Y + +S    AL  H++  TN+
Sbjct: 136 QVFDCRYVTTTSGMFEALCNHIKYSTNK 163


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 453  GPVQARVDSGTAPVINANLK 394
            G VQA+++   A ++N+NL+
Sbjct: 950  GTVQAQINPDFAFIVNSNLR 969


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 541 VVLGDFNAHHQEWLGSRTTDLP 606
           V+LG+ + HH+ +    +T+ P
Sbjct: 216 VMLGEISPHHEYYDSKSSTETP 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,806
Number of Sequences: 438
Number of extensions: 5611
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)