BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_P22 (821 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g46768.1 68414.m05217 AP2 domain-containing protein RAP2.1 (R... 31 1.2 At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family pr... 28 8.6 >At1g46768.1 68414.m05217 AP2 domain-containing protein RAP2.1 (RAP2.1) identical to AP2 domain containing protein RAP2.1 GI:2281627 from [Arabidopsis thaliana] Length = 153 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 559 NAHHQEWLGSRTTDLPGRTAYDFALAY 639 N + WLGS TTD+ AYD A+ Y Sbjct: 50 NKRSRLWLGSYTTDIAAARAYDVAVFY 76 >At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 729 Score = 27.9 bits (59), Expect = 8.6 Identities = 26/87 (29%), Positives = 41/87 (47%) Frame = +2 Query: 62 SLITLIWICASKILSLLNTNWRSHE*DTHRKRCSGVILHHNTQLVPLYYIFICQYADYLQ 241 SLI I I L+++NW S T +R S + +T L+ L +++ Y + Sbjct: 61 SLIRKIEIFVVLFEFLVDSNWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLY----R 116 Query: 242 SQSMFTGISQRSFLVLLLINYELDGLF 322 S+ + +Q S L LLL N + G F Sbjct: 117 SKILVDYCAQSSKLWLLLQNPSISGYF 143 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,490,839 Number of Sequences: 28952 Number of extensions: 417726 Number of successful extensions: 1005 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1004 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1882599200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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