Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P21
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   141   1e-34
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    37   0.003
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   6.0  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   6.0  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  141 bits (342), Expect = 1e-34
 Identities = 69/140 (49%), Positives = 95/140 (67%)
 Frame = +3

Query: 372 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 551
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117

Query: 552 RHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLXAGLAFPTGCSRNHCA 731
           R AAE HRQ R++ ++ IKPGM+M+D+   +E T R L+ EDGL +G+ FPTG S NHCA
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHCA 177

Query: 732 XHYTPXXGDTTVLEXDDVXK 791
            HYTP  GDTT+L+  DV K
Sbjct: 178 AHYTPNAGDTTILKEKDVMK 197


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
 Frame = +3

Query: 495 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 662
           TSE        + +   + + A E  +   K +    +PG  + DIC    E L +  ++
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 663 LIGEDGLXAGLAFPTGCSRNHCAXHYTPXXGD---TTVLEXDDVXK 791
           +        G+AFPT  S N  A H +P   D      L+  DV K
Sbjct: 67  VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVK 112


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 617 HARLDPIADVFSCLPVGFSSMS 552
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 528 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 635
           + D+  E+ +  E+H +T +H +  + P   +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 379 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRKS 552
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 553 DMLLKPTGRQENTSAIGSSL 612
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,126
Number of Sequences: 5004
Number of extensions: 39706
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)