Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P21
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...   174   6e-44
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    39   0.004
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.61 
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    29   3.2  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    29   3.2  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    29   3.2  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    29   3.2  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score =  174 bits (424), Expect = 6e-44
 Identities = 81/135 (60%), Positives = 102/135 (75%), Gaps = 2/135 (1%)
 Frame = +3

Query: 393 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 566
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK+ALD  +++++Q+ R +AE
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138

Query: 567 AHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLXAGLAFPTGCSRNHCAXHYTP 746
           AHRQ RK++++WIKPGMTMI+ICE LE T+RRLI E GL AGLAFPTGCS NHCA HYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198

Query: 747 XXGDTTVLEXDDVXK 791
             GDTTVL+  DV K
Sbjct: 199 NAGDTTVLQYGDVCK 213


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 558 AAEAHRQTRKHIRNWIKPGMTMIDICEE-----LEKTARRLIGEDGLXAGLAFPTGCSRN 722
           AAE      K +   IK G    D+C+      LEKT +    E     G+A PT  S +
Sbjct: 35  AAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISID 94

Query: 723 HCAXHYTPXXGDTTVL 770
           +C  HYTP   +  V+
Sbjct: 95  NCICHYTPLKSEAPVV 110


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 387 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 563
           ++P+ EL  +G   +   M H P  G + R A K +F+S  K  +  L KDIY    H  
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186

Query: 564 EAHR 575
           E HR
Sbjct: 187 EWHR 190


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 10  VAFLRIVYISFPINYYLNNSAL 75
           +AFLR++ I FP++YY N S +
Sbjct: 102 IAFLRVIAICFPVSYYNNRSKI 123


>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 486 NRFTSEEKRALDRLHKDIYQEIRH-AAEAHRQTRKHI 593
           NR    ++R +DR  K++ QEI+  AA+ H    +H+
Sbjct: 24  NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 546 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 406
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 16  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 546 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 406
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 13  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 546 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 406
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 22  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 546 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 406
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 489 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIK 608
           + + + K+ L +LH D YQ ++   E   +TR   +N+ K
Sbjct: 277 KLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWK 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,079
Number of Sequences: 27780
Number of extensions: 232497
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)