Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P20
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    28   1.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   7.9  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 436 RCPVSFGPIIVDVQCDVAGRVDGTEDELFRLSGNQDQS*VDLISGYIFC 290
           + P SFGP    +QC V    D   DE+  + GN   + V  +S +I C
Sbjct: 222 KTPASFGPPKSLLQCMVDMVCDSINDEV--VDGNLQLNVVKALSAFILC 268


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 504 SPSCAGSDPW*ISRRISAR---DTHSVAQSASGQLS*TCNAMSP 382
           +PS  GSDPW  S ++ +    D HS   S    +S TC   SP
Sbjct: 447 TPSFDGSDPWNPSSQLLSEPLFDQHSFQSSLDDLMSVTCFRDSP 490


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 521 PAPRAHHGHAPSAARTPPGA*LSRSTT 601
           P P AHH   PS +  PP A +SR+ +
Sbjct: 130 PNPAAHHAELPSGS-VPPSASVSRANS 155


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 354  SSSSVPSTRPATSHCTSTIIGPKLTGQRNACLAPRSCD*STRGRFLHSSVTLGALGLPLG 533
            SS+S  +T  AT   TS+I    +TG   + +A  S   S+      +S+T G+L   + 
Sbjct: 1025 SSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASIT-GSLSSSIA 1083

Query: 534  RTTV 545
              +V
Sbjct: 1084 TASV 1087


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 440 CVSRAEILRLIYQGSLPAQLGDSGRSRPAPRAHHGHAPSAARTPP 574
           C+ R     L+Y+  +  +  +  +  P P ++   APSA    P
Sbjct: 301 CIRRISFFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQP 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,655
Number of Sequences: 5004
Number of extensions: 62543
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)