Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P20
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    31   1.6  
06_01_0020 + 212055-213440                                             31   1.6  
04_04_0323 - 24392043-24393021,24393135-24393544                       29   4.7  
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902...    29   6.3  
05_04_0030 - 17338646-17338669,17338817-17339386                       28   8.3  
04_03_0141 + 11767781-11767880,11767953-11769262                       28   8.3  
02_05_0375 + 28387091-28387597                                         28   8.3  

>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 407 DNWPEADWATECVSRAEILRLIYQGSLPAQLGDSG-RSRPAPRAHHGHAPSAARTPPGA* 583
           D  P+  WA E +S     +     + PA    +G  SR  P  HHG  PS+ + PP   
Sbjct: 456 DVLPDGIWA-EGISLPSTGQFAENPTGPAPHPSAGFTSRAMPGQHHGMPPSSMKPPPQRP 514

Query: 584 LSRSTTEK*RWFKQ 625
           LS    +  R  KQ
Sbjct: 515 LSLDADDAVRTEKQ 528


>06_01_0020 + 212055-213440
          Length = 461

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 326 LILVSGKTKEFVFSPVDSAGDIALHVYDNWPEADWATECVSRAEILRLIYQGSLPAQLGD 505
           L+ +  + ++ + +  D+AG  AL  +       W   C++RA  L    Q    A + +
Sbjct: 245 LVALKERARQELLAAGDTAGAAALTRFQALSSLLW--RCITRARRLPAEQQTMCRAAINN 302

Query: 506 SGRSRPA-PRAHHGHAPSAART 568
            GR +PA PR + G++  A  T
Sbjct: 303 RGRLQPALPREYFGNSIYAIST 324


>04_04_0323 - 24392043-24393021,24393135-24393544
          Length = 462

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -1

Query: 543 PWCALGAGRERPESPSCAGSDPW*ISRRISARDTHSVAQSASGQLS*TCNAMSPAESTGL 364
           P+C++GA +    + S     P   SR  SA  + S + + +   S      SPA     
Sbjct: 228 PFCSVGATKPAASADS---PSPTSTSRTASASSSSSSSTATTASSSTAAGVRSPA----- 279

Query: 363 KTNSFVFPETRISRRLILSPGIFFA 289
           K+NSFV  E  ++  +I   G  F+
Sbjct: 280 KSNSFVGTEDYVAPEIIAGSGHDFS 304


>07_01_1037 -
           9026198-9026586,9026773-9026937,9027010-9027096,
           9027173-9027245,9027947-9028012,9028096-9028194,
           9028710-9028772,9028959-9029345
          Length = 442

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +3

Query: 276 DTQCRQK-IYPEIRSTYD*SWFPERRKSSSSVPSTRPATSH-CTSTIIGPKLTGQRNACL 449
           DT+ ++K I P  ++T   S   + +K+SSS  S+    S       + P    QR   +
Sbjct: 282 DTRMKEKDINPSNKNTPSYSADQQFQKTSSSSASSDEKLSRPLEGERVHPNSKKQRGDAV 341

Query: 450 APRSCD*STRGRFLHSSVTLG-ALGLPLGRTTVMHLVPREHLPEPNSHDQR 599
            P +   ST      +  T G A  L +G   V HLV    + +PN H Q+
Sbjct: 342 LPDNVMSST------NIETYGLANNLNIGLDDVAHLVEHASIKKPNEHQQK 386


>05_04_0030 - 17338646-17338669,17338817-17339386
          Length = 197

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 573 GGVRAALGA*PWCALGAGRERPESPSCAGSDPW*ISRRISARD 445
           G   AA     +C L  GR  P + +C  + PW ++ R+S  D
Sbjct: 2   GNTPAAAADLRFCLLEEGRPPPVAAACNPTPPWLLAIRVSRVD 44


>04_03_0141 + 11767781-11767880,11767953-11769262
          Length = 469

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 494 QLGDSGRSRPAPRAHHGHAPSAARTPP 574
           QLG     R AP +H G + S+AR PP
Sbjct: 331 QLGAPHAPRAAPSSHPGASSSSARPPP 357


>02_05_0375 + 28387091-28387597
          Length = 168

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 503 DSGRSRPAPRAHHGHAPSAARTPPGA*LSRSTTEK*RW 616
           D GR RP     H   PS + TP  A LS   T +  W
Sbjct: 75  DDGRERPMGERGHPALPSRSSTPRAARLSPPCTVRHLW 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,929,980
Number of Sequences: 37544
Number of extensions: 456509
Number of successful extensions: 1378
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)