Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P20
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_24907| Best HMM Match : RIIa (HMM E-Value=8.8)                      29   4.8  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   29   4.8  
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   29   6.4  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                28   8.5  

>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 TMSAKNIPGDKINLRLILVSGKTKEFVFSPVDSAGDIALHVYDNWPE 421
           T   K IP DKI LRLILVSGKT EFVFSP D+A  I   V+++WPE
Sbjct: 599 TQRTKCIPEDKICLRLILVSGKTHEFVFSPSDTAYYITQQVFEHWPE 645


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 500 GDSGRSRPAPRAHHGHAPSAARTPPGA*LSRSTTEK*RWFKQLLFGVVLHIVMDDCKSEK 679
           G SG  +  P   HG  PS   TPP     R       W   L   +  ++ M DC+ +K
Sbjct: 390 GASGSHQNTPSHIHGFKPSCPFTPPSTFSKRIV-----WIFMLPVHLAFYVTMPDCRVKK 444


>SB_24907| Best HMM Match : RIIa (HMM E-Value=8.8)
          Length = 144

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 225 SLDKSCATRRRIT--EKEADTQCRQKIYPEIRSTYD*SWFPERRKSSSSVPSTR 380
           S ++  +T+  +T  EK  D QCRQ++  E  S Y  S+     ++ SSVP  R
Sbjct: 17  SYEELKSTKSDVTYCEKLVD-QCRQRLLTEFDSWYTESFLGPDEQTDSSVPGVR 69


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 298 IFCRHCVSASFSVIRRRVAHDLSRERISLQP*EPSIRHKH 179
           I CR C++   SV  R  A   SR R+++   +PS+   H
Sbjct: 186 IMCRQCIATGVSVCNRLSARHNSRLRLAMSQ-KPSVSFTH 224


>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 298 IFCRHCVSASFSVIRRRVAHDLSRERISLQP*EPSIRHKHFTLPNHLAIITARKI 134
           I CR C++   SV  R  A   SR R+++   +PS+    FT+ +   +I   ++
Sbjct: 67  IMCRQCIATGVSVCNRLSARHNSRLRLAMSQ-KPSV---SFTIDDSFGVIDLSRL 117


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 303 PEIRSTYD*SWFPERRKSSSSVPSTRPATSHCTSTIIGPKLTGQRNACLAPRS 461
           PEI +  D +  PE   +  +  +  P T+  + T + PK T    A LAP +
Sbjct: 460 PEITAAPDTTMVPESTVAPET--TVAPETTVASETTVAPKTTAASEATLAPET 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,266,797
Number of Sequences: 59808
Number of extensions: 519787
Number of successful extensions: 1576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)