Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P19
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)            29   6.5  

>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 192 KVTFTISTHTLIHIKIREDIDYSYCFICKK-TDKLRRTQIVKRCLKKQNIWRSV 34
           KVTF+    T  H++I +D+D S  ++ K  +  ++ + I   CLKK  I R V
Sbjct: 254 KVTFSEKIPT--HVQIFDDMDNSEMYVLKSPSSVVQSSSINTACLKKDFIGRIV 305


>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
          Length = 306

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 273 YRPNKDTQGRSRRLPRR--YHPDPTQ 344
           YRP+KDT  RS  + RR  YHPD  +
Sbjct: 76  YRPHKDTIFRSGIITRRRYYHPDKVE 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,417
Number of Sequences: 59808
Number of extensions: 176358
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)