Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P19
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.6  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    28   7.6  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    28   7.6  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    28   7.6  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    28   7.6  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    28   7.6  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    28   7.6  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 5   FFWPNLSILVTLRQIFCFFKHLLTICVRLNLSV 103
           + WP  SI + LR +FC F  LL I   +N+S+
Sbjct: 214 YIWPTKSISLQLRVVFCLF--LLIIGRLINVSL 244


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
 Frame = -2

Query: 706 PGXSX-RXGEXRRXGSXXLXGXXXXXTXAXPXXXXDRXXRVXPGXXXGXGGXXGXXX--G 536
           PG S  + G+  + G+    G       A          +  PG   G  G  G     G
Sbjct: 109 PGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPG 168

Query: 535 PXGXPXXXAXPSGP 494
           P G P   A PSGP
Sbjct: 169 PDGNPGSPAGPSGP 182


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
 Frame = -2

Query: 706 PGXSX-RXGEXRRXGSXXLXGXXXXXTXAXPXXXXDRXXRVXPGXXXGXGGXXGXXX--G 536
           PG S  + G+  + G+    G       A          +  PG   G  G  G     G
Sbjct: 109 PGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPG 168

Query: 535 PXGXPXXXAXPSGP 494
           P G P   A PSGP
Sbjct: 169 PDGNPGSPAGPSGP 182


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
 Frame = -2

Query: 706 PGXSX-RXGEXRRXGSXXLXGXXXXXTXAXPXXXXDRXXRVXPGXXXGXGGXXGXXX--G 536
           PG S  + G+  + G+    G       A          +  PG   G  G  G     G
Sbjct: 109 PGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPG 168

Query: 535 PXGXPXXXAXPSGP 494
           P G P   A PSGP
Sbjct: 169 PDGNPGSPAGPSGP 182


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
 Frame = -2

Query: 706 PGXSX-RXGEXRRXGSXXLXGXXXXXTXAXPXXXXDRXXRVXPGXXXGXGGXXGXXX--G 536
           PG S  + G+  + G+    G       A          +  PG   G  G  G     G
Sbjct: 109 PGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPG 168

Query: 535 PXGXPXXXAXPSGP 494
           P G P   A PSGP
Sbjct: 169 PDGNPGSPAGPSGP 182


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 5   FFWPNLSILVTLRQIFCFFKHLLTICVRLNLSV 103
           + WP  SI + LR +FC F  LL I   +N+S+
Sbjct: 214 YIWPTKSISLQLRVVFCLF--LLIIGRLINVSL 244


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 5   FFWPNLSILVTLRQIFCFFKHLLTICVRLNLSV 103
           + WP  SI + LR +FC F  LL I   +N+S+
Sbjct: 214 YIWPTKSISLQLRVVFCLF--LLIIGRLINVSL 244


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 5   FFWPNLSILVTLRQIFCFFKHLLTICVRLNLSV 103
           + WP  SI + LR +FC F  LL I   +N+S+
Sbjct: 214 YIWPTKSISLQLRVVFCLF--LLIIGRLINVSL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,790,200
Number of Sequences: 27780
Number of extensions: 151797
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)