Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P19
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing ...    30   2.3  
At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containi...    28   7.1  
At5g38590.2 68418.m04666 F-box family protein contains F-box dom...    28   7.1  
At5g38590.1 68418.m04667 F-box family protein contains F-box dom...    28   7.1  
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    28   7.1  

>At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing
           protein similar to terminal ear1 [Zea mays] GI:3153237,
           SP|P08965 Meiosis protein mei2 {Schizosaccharomyces
           pombe}; contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 282

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 279 PNKDTQGRSRRLPRRYHPDPTQDLT 353
           PN +    ++ LP+RY P+P+Q++T
Sbjct: 72  PNPNVYESTQELPQRYSPNPSQEMT 96


>At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 58  LQTSFNYLCSSQFICLLTYKTIRIINIFTNFYMNQCMS*DCKCYLVVKLTKNGS 219
           +Q  FN++  S+ +       I +++  T  +M   M+ DC  ++V+   KNGS
Sbjct: 48  IQRIFNFMTGSEDL----KDDISVLDTGTLMWMASLMTSDCDYFMVITTNKNGS 97


>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -3

Query: 183 FTISTHTLIHIKIREDIDYSYCFICKKTDKLRRTQIVKRCLKKQNIWRSVTSIDKL 16
           + I T +L ++K+ +     +  + K   KLR   +  +C   +++  S+TS+  L
Sbjct: 216 YWIDTPSLEYLKLEDWNSCDHLSLIKNMPKLREAYVDAKCFLPKSVIESITSVKHL 271


>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 289

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -3

Query: 183 FTISTHTLIHIKIREDIDYSYCFICKKTDKLRRTQIVKRCLKKQNIWRSVTSIDKL 16
           + I T +L ++K+ +     +  + K   KLR   +  +C   +++  S+TS+  L
Sbjct: 216 YWIDTPSLEYLKLEDWNSCDHLSLIKNMPKLREAYVDAKCFLPKSVIESITSVKHL 271


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 52  LFLQTSFNYLCSSQFICLLTYKTIRIINIFTNFYMNQ 162
           + + T F ++C + F+ LLT   IR++ IF + + N+
Sbjct: 263 VLIDTGF-FVCVNSFLSLLTVMPIRVLLIFMDAFKNR 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,012,018
Number of Sequences: 28952
Number of extensions: 118441
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)