Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P18
         (853 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56731 Cluster: PREDICTED: similar to CG2910-PB,...   105   1e-21
UniRef50_Q7KMJ6 Cluster: BcDNA.GH11110; n=6; Endopterygota|Rep: ...    91   4e-17
UniRef50_Q16MW3 Cluster: RNA recognition motif protein split end...    67   5e-10
UniRef50_Q4RVU0 Cluster: Chromosome 9 SCAF14991, whole genome sh...    58   4e-07
UniRef50_Q4RXQ4 Cluster: Chromosome 11 SCAF14979, whole genome s...    55   3e-06
UniRef50_Q96T37 Cluster: Putative RNA-binding protein 15; n=32; ...    53   8e-06
UniRef50_UPI000069F4A1 Cluster: Putative RNA-binding protein 15B...    53   1e-05
UniRef50_Q4T0D2 Cluster: Chromosome undetermined SCAF11227, whol...    44   0.004
UniRef50_Q9VB74 Cluster: CG6066-PA; n=3; Sophophora|Rep: CG6066-...    35   2.3  
UniRef50_Q6IDC4 Cluster: At5g27860; n=6; Magnoliophyta|Rep: At5g...    33   6.9  

>UniRef50_UPI0000D56731 Cluster: PREDICTED: similar to CG2910-PB,
           isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG2910-PB, isoform B - Tribolium castaneum
          Length = 728

 Score =  105 bits (253), Expect = 1e-21
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 4/104 (3%)
 Frame = +3

Query: 252 RDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSD---XXXXXXXXXXXXXXXXXXX 422
           RD+ITV+I+NMKRSS RD+ PRSKR+RSS+GRYDDSSD                      
Sbjct: 17  RDKITVRIQNMKRSSDRDTPPRSKRSRSSMGRYDDSSDERLTPERVRRRGSRNRSPSPRP 76

Query: 423 XYVSPHRDDYVRSRDARDESVRSY-YKVLCVSALHPKASDEIVK 551
            YVSPHRD+Y+R  +      R+Y YKVLCVSALHPKASDE++K
Sbjct: 77  RYVSPHRDEYLRPPE------RAYPYKVLCVSALHPKASDEVIK 114



 Score = 99.5 bits (237), Expect = 9e-20
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 2/65 (3%)
 Frame = +2

Query: 590 LVIKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYEPVRSE--YRPRP 763
           L I++SH++DERVAY+CFR+ EDARDAKH KPRII+YDKVA V+PVYE  RS   YR RP
Sbjct: 127 LSIRLSHDVDERVAYVCFRNPEDARDAKHGKPRIIIYDKVAIVEPVYEVPRSSDIYRSRP 186

Query: 764 RSIXP 778
           RSI P
Sbjct: 187 RSITP 191



 Score = 34.7 bits (76), Expect = 3.0
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 502 YYVLVLYTL--KRRMRLSRDTLYREYKKYGDFSYK 600
           Y VL +  L  K    + +DTLYREYKKYGD S +
Sbjct: 96  YKVLCVSALHPKASDEVIKDTLYREYKKYGDLSIR 130


>UniRef50_Q7KMJ6 Cluster: BcDNA.GH11110; n=6; Endopterygota|Rep:
           BcDNA.GH11110 - Drosophila melanogaster (Fruit fly)
          Length = 793

 Score = 90.6 bits (215), Expect = 4e-17
 Identities = 38/62 (61%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
 Frame = +2

Query: 596 IKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYE-PVRSEYRPRPRSI 772
           ++++H+LDERVAY+CFR+ EDAR+AKH KPR+I+YDK+A V+PVY+   R EYRPR  S+
Sbjct: 131 VRLAHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRPRGHSM 190

Query: 773 XP 778
            P
Sbjct: 191 SP 192



 Score = 63.3 bits (147), Expect = 7e-09
 Identities = 44/114 (38%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
 Frame = +3

Query: 237 RSDRDRDRITVKIRNMKRSSSRDSMPRSK----RTRSSIGR-YDDSS----DXXXXXXXX 389
           R     DRIT+KI NMKRS+SR   P S+    R   S+GR YD+ S    D        
Sbjct: 5   RDGAGADRITIKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPE 64

Query: 390 XXXXXXXXXXXXYVSPHRDDYVRSRDARDESVRSYYKVLCVSALHPKASDEIVK 551
                       Y SPHR+ Y+R     +    + YKVLCVSAL PKA D+ ++
Sbjct: 65  RMRRRLDRSPSRYGSPHREPYMRGPPPAERP--AGYKVLCVSALPPKAPDDFIE 116


>UniRef50_Q16MW3 Cluster: RNA recognition motif protein split ends;
           n=1; Aedes aegypti|Rep: RNA recognition motif protein
           split ends - Aedes aegypti (Yellowfever mosquito)
          Length = 663

 Score = 67.3 bits (157), Expect = 5e-10
 Identities = 44/89 (49%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
 Frame = +3

Query: 249 DRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSD----XXXXXXXXXXXXXXXXX 416
           DRDRITVKIRNMKRS+SRDS  RSKR R SIGRY+ SSD                     
Sbjct: 8   DRDRITVKIRNMKRSASRDSPARSKR-RGSIGRYEGSSDERVTPDRMRRRVARSPSPRGG 66

Query: 417 XXXYVSPHRDDYVRSRDARDESVRSY-YK 500
              Y SPHR++Y  SR  R+     Y YK
Sbjct: 67  STRYASPHREEY--SRGGRESGSERYSYK 93


>UniRef50_Q4RVU0 Cluster: Chromosome 9 SCAF14991, whole genome
           shotgun sequence; n=6; Euteleostomi|Rep: Chromosome 9
           SCAF14991, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 841

 Score = 57.6 bits (133), Expect = 4e-07
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +2

Query: 596 IKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYEPVRSEYRPRPRSI 772
           +KIS   DER+A++ FR  EDAR AKHA+ R++LYD+   ++ VY   R    P  R +
Sbjct: 154 VKISRSNDERIAFVNFRKPEDARAAKHARGRLVLYDRPLKIEAVYVTRRRSRSPVEREL 212


>UniRef50_Q4RXQ4 Cluster: Chromosome 11 SCAF14979, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 11 SCAF14979, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 804

 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +2

Query: 596 IKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYEPVRSEYRP 757
           IKI  E DERVA++ FR  +DAR AKHA+ +++LYD+   ++ VY   R    P
Sbjct: 147 IKIGRENDERVAFVNFRRPDDARAAKHARGKLVLYDRPLKIEAVYMQRRRSRSP 200


>UniRef50_Q96T37 Cluster: Putative RNA-binding protein 15; n=32;
           Amniota|Rep: Putative RNA-binding protein 15 - Homo
           sapiens (Human)
          Length = 977

 Score = 53.2 bits (122), Expect = 8e-06
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = +2

Query: 596 IKISH-----ELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYEPVRSEYRPR 760
           +KISH       DERVA++ FR  EDAR AKHA+ R++LYD+   ++ VY   R    P 
Sbjct: 202 VKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPL 261

Query: 761 PRSIXP 778
            +   P
Sbjct: 262 DKDTYP 267


>UniRef50_UPI000069F4A1 Cluster: Putative RNA-binding protein 15B
           (RNA-binding motif protein 15B).; n=1; Xenopus
           tropicalis|Rep: Putative RNA-binding protein 15B
           (RNA-binding motif protein 15B). - Xenopus tropicalis
          Length = 661

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +2

Query: 596 IKISHELD-ERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVY--EPVRSEYRPRPR 766
           +K+SH  +  RVAYI FR   +AR A+HAK R +LYD+   V+PV+  +P R   RP P 
Sbjct: 34  VKLSHTPELGRVAYINFRRPAEARQARHAKVRPVLYDRQLRVEPVFTQQPTR---RPEP- 89

Query: 767 SIXPLTMIALXIRLXPXYXKTXSP 838
              PL++ +L     P Y ++ SP
Sbjct: 90  --SPLSLTSL-----PSYPRSTSP 106


>UniRef50_Q4T0D2 Cluster: Chromosome undetermined SCAF11227, whole
           genome shotgun sequence; n=5; Tetraodontidae|Rep:
           Chromosome undetermined SCAF11227, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 602

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +2

Query: 563 IENIRSMVTLVIKISHELD-ERVAYICFRSAEDARDAKHAK-PRIILYDKVAXVDPVYEP 736
           I   +    + +K+SH  +  R+AY+ FR  EDA++A+HAK  R++L ++   V+P+Y  
Sbjct: 37  IHEFKKFGDVSVKLSHTPELGRIAYVNFRHPEDAKEARHAKSSRLLLGERPLKVEPMYVR 96

Query: 737 VRSEYRP 757
            RS   P
Sbjct: 97  RRSVTPP 103


>UniRef50_Q9VB74 Cluster: CG6066-PA; n=3; Sophophora|Rep: CG6066-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 463

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 243 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSS 362
           DR+  R     R+ +RS  +D++PR +RTRSS  R   SS
Sbjct: 48  DRELHRERTSNRSSRRSREKDAVPRRRRTRSSPSRSSSSS 87


>UniRef50_Q6IDC4 Cluster: At5g27860; n=6; Magnoliophyta|Rep:
           At5g27860 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 122

 Score = 33.5 bits (73), Expect = 6.9
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 237 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSS 362
           R+DRDRD  ++K+R   RS+S+    R   + SS   Y DSS
Sbjct: 31  RNDRDRD--SLKVRKKSRSTSKKRRRRQHSSDSSDSSYSDSS 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,031,328
Number of Sequences: 1657284
Number of extensions: 11671038
Number of successful extensions: 30269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30035
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)