Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P18
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.5  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 692 ILYDKVAXVDPVYEPVRSEYRPRPRSIXPLTMI 790
           +L D V  + PVY P R+E  P   S  P+T +
Sbjct: 40  LLEDPVNPIRPVYTPTRTEITPVTLSPIPITPV 72


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/70 (18%), Positives = 34/70 (48%)
 Frame = +2

Query: 572  IRSMVTLVIKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDPVYEPVRSEY 751
            +++++  ++K   +L+  V   CF S       K++   +++Y     + P Y+ V+S  
Sbjct: 904  MKAIIKKLLKSLRKLEGPVKIACFGSYRTGLMTKNSDLDLVIYSSKEALLPYYDRVKSII 963

Query: 752  RPRPRSIXPL 781
            +    ++ P+
Sbjct: 964  KNEFSNVMPI 973


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,194
Number of Sequences: 5004
Number of extensions: 53376
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)