Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P18
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)                      36   0.055
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.3  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         29   6.3  
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
          Length = 224

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = -3

Query: 476 ISSITRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITR 297
           +++ TR HV I  R H++T R R   +T      +T  RA V     A     +R  +  
Sbjct: 81  VATRTRAHVAIRTRAHVAT-RTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRAHVAT 139

Query: 296 RTSLHIANFHRNSIS----ISIATR*SNHESSLRRTTI 195
           RT  H+A   R+ ++      +ATR  +H ++  R  +
Sbjct: 140 RTRSHVATRTRSHVATRTRAHVATRTRSHVATRTRAHV 177



 Score = 31.9 bits (69), Expect = 0.68
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = -3

Query: 464 TRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITRRTSL 285
           TR HV I  R H++T R R   +       +T  RA V     A     +R  +  RT  
Sbjct: 69  TRAHVAIRTRAHVAT-RTRAHVAIRTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRA 127

Query: 284 HIANFHRNSISI----SIATR*SNHESSLRRTTIPNELQTLITQQITENLNLGRTNSY 123
           H+A   R  ++      +ATR  +H ++  R  +    ++ +  +   ++ + RT ++
Sbjct: 128 HVATRTRAHVATRTRSHVATRTRSHVATRTRAHVATRTRSHVATRTRAHVAI-RTRAH 184


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 243 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSS 362
           DRDRDR   K R+  R   RD   R ++TR    R    S
Sbjct: 415 DRDRDRDRDKERDKDRHRDRDRRDRKEKTRDRTSRSPSES 454


>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 474 LEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHT 346
           L   +  + HR+ +THI   G  +V++  LV G  + Q Y+++
Sbjct: 111 LSSRDGGQEHRNSITHISNGGMFTVVNGCLVRGTASIQCYQYS 153


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 617 DERVAYICFRSAEDARDAKHA---KPRIILYDKVAXVDPVYEPVRS 745
           ++R A + FRS +DA++ K A   + R IL+D+   ++    P R+
Sbjct: 127 NDRYAVLYFRSLDDAKETKRALERRSRTILFDRPLRIEYNLYPERT 172


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/109 (20%), Positives = 43/109 (39%)
 Frame = -3

Query: 497  VVAADRFISSITRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF* 318
            V+A    ++++T TH+       ++T+ A   Y+   +   +       + T+ A     
Sbjct: 1860 VMATSTAVATLTSTHITTQTNTAVTTSVAMTTYTHLITITNTETKTETAVSTSVAVA--- 1916

Query: 317  SRHTITRRTSLHIANFHRNSISISIATR*SNHESSLRRTTIPNELQTLI 171
            +   +   TS H+A     +I  S A   S H ++   T + N     I
Sbjct: 1917 TSTKVATLTSTHVATTTSVAIETSTAIATSTHVTTQLNTQVVNSTSVAI 1965


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 602 FL*LKSPYFLYSLYKVSLDNLIRRFRV 522
           FL L SPYFL    +  L+ LIRR+RV
Sbjct: 183 FLKLLSPYFLLKPAQKCLEWLIRRYRV 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,539
Number of Sequences: 59808
Number of extensions: 376563
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)