Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P18
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.88 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   8.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 492 SCGQIHLEHHENA--RNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHTYQYCCVSVL 319
           S   I LEH E    R H   V +I  A   S+  VV+    H R+ + H     CV  +
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVFVNNILAASACSLF-VVIFHFAHPREEFNHWTVMRCVQAM 316

Query: 318 IA 313
           IA
Sbjct: 317 IA 318


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 292 LRFILRIFTVIRSLSLSLRGNPIMKAHFDELLSQTN 185
           ++ ++ I  ++  L     GNP  K  +D+LLS  N
Sbjct: 2   MKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYN 37


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 268 TVIRSLSLSL-RGNPIMKAHFDELLSQTN 185
           T+I  LS  +  GNP  K  +D+LLS  N
Sbjct: 5   TIILILSARICHGNPDAKRLYDDLLSNYN 33


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 710 AXVDPVYEPVRSEYRPRPRSIXPLTMIA 793
           A +DP      S YRP+PR   P+  +A
Sbjct: 541 AGIDPK-SIFNSGYRPKPRMSGPVAAVA 567


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
 Frame = +1

Query: 373  EARNEYDVEYAPLARAVDM-CHLIAMITCVLVMLEMNLSAAT---TKYYVLVL------Y 522
            E R ++  E  P     D  C  +   T  +  +   LSAA    T Y V+V+      Y
Sbjct: 1070 EERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGGIY 1129

Query: 523  TLKRRMRLSRDTLYREYKKYGDFS 594
            T   ++  S +T+    KKY ++S
Sbjct: 1130 TKDTKITSSSETILHGLKKYTNYS 1153


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 614 LDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDP 724
           +D +V    +  +E A+  +  K R  +Y+K+  VDP
Sbjct: 345 MDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 381


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 614 LDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDP 724
           +D +V    +  +E A+  +  K R  +Y+K+  VDP
Sbjct: 260 MDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 296


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 614 LDERVAYICFRSAEDARDAKHAKPRIILYDKVAXVDP 724
           +D +V    +  +E A+  +  K R  +Y+K+  VDP
Sbjct: 579 MDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 615


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 391 DVEYAPLARAVDMCHLIAMITCVLVMLEMNLSAATTKYYVLVL 519
           + E  P+ +A+  CH   + TC +   + NLS  ++    L+L
Sbjct: 698 EAEPQPIGKALSKCHNRNVTTCNM-FRKTNLSGDSSSGTTLLL 739


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 670 SVSRILCTSEADVGYSLIQ 614
           S+ ++LC  EA+  Y+L++
Sbjct: 104 SLEKLLCNVEAEENYNLLE 122


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 468 HHENARNHRDEVT 430
           HH+NAR H   VT
Sbjct: 121 HHDNARPHTSLVT 133


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 244 SLRGNPIMKAHFDELLSQTN 185
           ++ GNP  K  +D+LLS  N
Sbjct: 22  AVAGNPDAKRLYDDLLSNYN 41


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 244 SLRGNPIMKAHFDELLSQTN 185
           ++ GNP  K  +D+LLS  N
Sbjct: 22  AVAGNPDAKRLYDDLLSNYN 41


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 468 HHENARNHRDEVT 430
           HH+NAR H   VT
Sbjct: 243 HHDNARPHTSLVT 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,674
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)