Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P18
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27860.1 68418.m03342 expressed protein                             33   0.18 
At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    29   5.2  
At3g22380.1 68416.m02825 expressed protein                             29   5.2  

>At5g27860.1 68418.m03342 expressed protein
          Length = 177

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 237 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSS 362
           R+DRDRD  ++K+R   RS+S+    R   + SS   Y DSS
Sbjct: 31  RNDRDRD--SLKVRKKSRSTSKKRRRRQHSSDSSDSSYSDSS 70


>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 355 IALTSVEARNEYDVEYAPLARAVDMCHLI 441
           I L ++E R E   E A +ARA D CHL+
Sbjct: 411 IDLENLEKRREMLNELASVARASDSCHLV 439


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 243 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSD 365
           DRDR+R   + R   R +SR    R +R     G  DD  D
Sbjct: 63  DRDRERERERDRERDRLNSRSKRRRGERLMMVHGNLDDGGD 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,955
Number of Sequences: 28952
Number of extensions: 259775
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)