Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P16
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   223   3e-59
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   219   3e-58
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    58   2e-09
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    39   0.001
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    36   0.009
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    32   0.12 
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   3.3  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   3.3  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  223 bits (544), Expect = 3e-59
 Identities = 98/169 (57%), Positives = 121/169 (71%)
 Frame = +2

Query: 161 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 340
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65

Query: 341 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQ 520
           FPV+L               T+V+ GD V+ LY P+C TCKFC + KTNLC ++R+TQG+
Sbjct: 66  FPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGK 125

Query: 521 GVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 667
           G+MPDGT RF C G  L HFMGCSTFS+YTVV +IS+  +   APLD V
Sbjct: 126 GLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSV 174



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 669 LLGCGVPTGYGAALNTAKVEPGSNCAI 749
           LLGCG+ TGYGAA  TA ++ G + A+
Sbjct: 176 LLGCGITTGYGAATITADIKEGDSVAV 202


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  219 bits (536), Expect = 3e-58
 Identities = 99/171 (57%), Positives = 122/171 (71%)
 Frame = +2

Query: 155 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 334
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPE
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60

Query: 335 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQ 514
           G FP+VL                +V+PGDHV+ LY P+C  CKFC + KTNLC K+R TQ
Sbjct: 61  GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQ 120

Query: 515 GQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 667
           G+G+MPDGT RF C+ + L H+MGCS+FSQYTVV +ISL  ++ +APL  +
Sbjct: 121 GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSI 171



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 669 LLGCGVPTGYGAALNTAKVEPGSNCAI 749
           LLGCGV TG+GA  ++AKVE GS  A+
Sbjct: 173 LLGCGVTTGFGAVTHSAKVESGSTVAV 199


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
 Frame = +2

Query: 179 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 349
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCHTD + L G  P     P+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65

Query: 350 VLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGV 526
           +                T +K GD V V      C  C++C+  +  +C  +   Q  G 
Sbjct: 66  IGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHI---QLSGY 122

Query: 527 MPDGTRRFRC 556
             DGT +  C
Sbjct: 123 TVDGTFQHYC 132


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 260 EVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVV 430
           +V+V I ATG+C +D  Y   G   + +   P++L               +S+KPGD V 
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90

Query: 431 PLYVPQCNTCKFCLNPKTNLC 493
                 C  C +C + + NLC
Sbjct: 91  VEPGCVCRLCDYCRSGRYNLC 111


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
 Frame = +2

Query: 185 LAAVAWEAGKPLSIEEIEVDPPKAG---EVRVKITATGVCH-TDAYTLSGKDPEGVFPVV 352
           + A  W+   PL+++  EV  P      +V VK TA  +C  +D++  SG+ P      +
Sbjct: 37  MKACVWDG--PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94

Query: 353 LXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMP 532
           L                +++ GD VV  +   C  C FC   +   C     ++   V  
Sbjct: 95  LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDV-N 153

Query: 533 DGTRRFRCKG--QELYHFMGCSTFSQYTVVLEISLCKVAEAAP 655
            G+      G  + L    GC          EI+ CK+ +  P
Sbjct: 154 YGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIP 196


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 218 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 355
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 51  ICLIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 164
           + L+ F  +V S  S + F+  L FQH    S P +SC Q
Sbjct: 175 LALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 416  GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 571
            G HVV L  V   N C   +  KT    KV   +   + P G+R++ C G  L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,750
Number of Sequences: 5004
Number of extensions: 66482
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)