Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P15
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.089
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.27
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.5
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 4.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 26 7.7
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 7.7
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 7.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.089
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 508 SWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTSF 687
SW T P TS S+V S +++ T TFT S S+ S+ +T ++S +S
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677
Query: 688 WTEN 699
+ N
Sbjct: 678 FYSN 681
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.27
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -2
Query: 394 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 236
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 235 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 74
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 307 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 128
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 127 SSLR 116
+SLR
Sbjct: 200 ASLR 203
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -1
Query: 314 RDGESRVYPAVR-VHNGERDFINDAVN 237
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 513 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 626
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 11 HSAPDTRT*RTSVLTTATDAPRARH 85
HS P TR R SV TTAT R+++
Sbjct: 160 HSPPSTRKRRGSVGTTATHTKRSKN 184
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 722 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 543
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 542 LVFNDGTVKIQDQHLDAASF 483
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 722 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 543
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 542 LVFNDGTVKIQDQHLDAASF 483
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 9 SIPHPTRGRSARPYSRPRPTRRAPA 83
SIP P +GRSA P P P R AP+
Sbjct: 350 SIPLPPQGRSAPP---PPPPRSAPS 371
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 722 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 543
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 542 LVFNDGTVKIQDQHLDAASF 483
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 7.7
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Frame = +3
Query: 234 PIDCIVDEIPLAVMDTYCWIYSTFTIPNRL------IGRVGKDYVQPGVGPHVEGQDEVK 395
P+ VD P+A +D C + T PN L G D V P V G ++
Sbjct: 77 PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLD 136
Query: 396 YHKYYQWVCFALFFQAILFYVP--RYLWKTWEGGRIKMLVLDLNCPIVEDECKSGR 557
+ Q + A F A+ P +++ K + G + +L L + C R
Sbjct: 137 EYIQAQ-ILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPR 191
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = -1
Query: 635 FTYKESES--VKVLSVQVRVEIVDK*LFTTRLALVFNDGTVKIQDQHLDAASFPRFPQVA 462
F Y E+ +K+++ ++ + +L +F+ ++ + ++P ++
Sbjct: 171 FRYPEASHKLLKIITDATVSYLIQQVYAGAQLLQIFDSWAGELSPEDFTEYAYPYLVRIC 230
Query: 461 GNIKQDCLKE*RKTNPLIIFVIFNFVLSFDMWADAGLHVI 342
+KQ K+ R P+I+F + + D D+G VI
Sbjct: 231 QEVKQHLKKKKRDEVPMIVFAKGAW-YAIDQLCDSGYDVI 269
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 414 WVCFALFFQAILFYVP---RYLWKTWEGGRIKMLV 509
WV L+F+AI+ VP L+ T +GG++++ V
Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,552
Number of Sequences: 5004
Number of extensions: 74625
Number of successful extensions: 255
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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