Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P15
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915...    31   0.87 
04_04_0339 - 24513699-24516827                                         30   2.0  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   6.2  
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890     29   6.2  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    29   6.2  
09_06_0216 + 21627238-21627834                                         28   8.1  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   8.1  

>07_03_0699 +
           20772415-20773450,20789050-20789606,20790971-20791567,
           20792258-20792413
          Length = 781

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  PHPTRGRSARPYSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILI- 191
           PHP RGR   P    +P   APA     G + G+    +  +     R H +   +I + 
Sbjct: 140 PHPARGRGVHP---RQPIAVAPAARHGAGCLLGVTSNGNTALHLVASRGHAELAALIRVR 196

Query: 192 AFSLLVTSRQYIGDPIDC 245
           A SL+ T  + +  P+ C
Sbjct: 197 APSLVATRNRCLDTPLHC 214


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 505 WSWILTV-PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSS 675
           W  ++ V  S K+ +  +V S +  + T T +L+ +TL   L +  S L T W++ S+
Sbjct: 272 WKLLIEVLESAKSGSKMIVTSRVPDVVTMTNSLRPYTLKRLLPIDSSNLLTQWMQNSA 329


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 395 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 237
           + FVLS +  AD  L V   +    D SVR G+ R+Y A+    +NG    +N   N
Sbjct: 33  WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89


>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
          Length = 595

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 392 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 294
           N  LSFD W  D  LH+++    D   R+  SRV
Sbjct: 12  NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 15  PHPTRGRSARPYSRPRPTRRAPAMFDV--FGSVKGLLKLDSVCIDNNVFRLHYKA 173
           P P+ G+  +P SRP PT    A+F+V  FG+ KG    D V  D   F   + A
Sbjct: 115 PTPSCGKGNQPPSRPTPTSPQGAVFNVVDFGA-KG----DGVSDDTKAFEAAWAA 164


>09_06_0216 + 21627238-21627834
          Length = 198

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 517 LTVPSLKTSASRVVKSYLSTISTRTCTLKT 606
           LTVPS+ T  +  V SY++T +T T T  T
Sbjct: 160 LTVPSVDTYNTSTVTSYVATDNTSTITSST 189


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 274  WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLRYSFKQSCF 453
            W+    Y L    + +L A  +RI       HM +    LN+T  I        FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265

Query: 454  MFP 462
            + P
Sbjct: 1266 LPP 1268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,398,420
Number of Sequences: 37544
Number of extensions: 506715
Number of successful extensions: 1537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)